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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_022781.5 → NP_073618.3 E3 ubiquitin-protein ligase RNF38 isoform 1
See identical proteins and their annotated locations for NP_073618.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AF394047, AL120640, AL136817, AL161792, BC033786
- Consensus CDS
-
CCDS6603.1
- UniProtKB/Swiss-Prot
- A6PVP9, B1AM81, B1AM82, B3KSG4, E7EVL3, Q7LB33, Q8N0Y0, Q9H0F5, Q9H748
- Related
- ENSP00000259605.6, ENST00000259605.11
- Conserved Domains (1) summary
-
- cd16472
Location:460 → 504
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
NM_194328.3 → NP_919309.1 E3 ubiquitin-protein ligase RNF38 isoform 2
See identical proteins and their annotated locations for NP_919309.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has an alternate 5' terminal exon compared to variant 1. This difference causes translation initiation at a downstream AUG and an isoform (2) with a shorter N-terminus compared to isoform 1. Variants 2, 5 and 6 encode the same isoform.
- Source sequence(s)
-
AF394047, AL161792, AL354935, BG722531, BI459742
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Related
- ENSP00000349566.3, ENST00000357058.7
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
NM_194329.3 → NP_919310.1 E3 ubiquitin-protein ligase RNF38 isoform 3
See identical proteins and their annotated locations for NP_919310.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform 3), compared to isoform 1.
- Source sequence(s)
-
AF394047, AL120640, AL161792, BC033786
- Consensus CDS
-
CCDS6604.1
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Related
- ENSP00000335239.5, ENST00000353739.8
- Conserved Domains (1) summary
-
- cd16472
Location:410 → 454
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
NM_194330.3 → NP_919311.1 E3 ubiquitin-protein ligase RNF38 isoform 2
See identical proteins and their annotated locations for NP_919311.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) has an alternate 5' terminal exon compared to variant 1. This difference causes translation initiation at a downstream AUG and an isoform (2) with a shorter N-terminus compared to isoform 1. Variants 2, 5 and 6 encode the same isoform.
- Source sequence(s)
-
AF394047, AL161792, AL354935, BC033786, BI520161, DA483270
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Related
- ENSP00000367117.2, ENST00000377885.6
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
NM_194332.3 → NP_919313.1 E3 ubiquitin-protein ligase RNF38 isoform 2
See identical proteins and their annotated locations for NP_919313.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) has an alternate 5' terminal exon and lacks an exon compared to variant 1. These differences cause translation initiation at a downstream AUG and an isoform (2) with a shorter N-terminus compared to isoform 1. Variants 2, 5 and 6 encode the same isoform.
- Source sequence(s)
-
AF394047, AL161792, AL354935, BG722531, BI459742, DA189510
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Related
- ENSP00000343947.4, ENST00000350199.8
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
36336400..36487669 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047422796.1 → XP_047278752.1 E3 ubiquitin-protein ligase RNF38 isoform X3
-
XM_047422795.1 → XP_047278751.1 E3 ubiquitin-protein ligase RNF38 isoform X2
-
XM_047422794.1 → XP_047278750.1 E3 ubiquitin-protein ligase RNF38 isoform X1
-
XM_017014296.2 → XP_016869785.1 E3 ubiquitin-protein ligase RNF38 isoform X7
- Conserved Domains (1) summary
-
- cd16472
Location:347 → 391
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
XM_011517712.3 → XP_011516014.1 E3 ubiquitin-protein ligase RNF38 isoform X6
See identical proteins and their annotated locations for XP_011516014.1
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
XM_017014297.2 → XP_016869786.1 E3 ubiquitin-protein ligase RNF38 isoform X7
- Conserved Domains (1) summary
-
- cd16472
Location:347 → 391
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
XM_047422803.1 → XP_047278759.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_017014294.2 → XP_016869783.1 E3 ubiquitin-protein ligase RNF38 isoform X5
-
XM_047422802.1 → XP_047278758.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_047422805.1 → XP_047278761.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_006716721.4 → XP_006716784.1 E3 ubiquitin-protein ligase RNF38 isoform X6
See identical proteins and their annotated locations for XP_006716784.1
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
XM_005251367.4 → XP_005251424.1 E3 ubiquitin-protein ligase RNF38 isoform X6
See identical proteins and their annotated locations for XP_005251424.1
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
XM_005251366.4 → XP_005251423.1 E3 ubiquitin-protein ligase RNF38 isoform X6
See identical proteins and their annotated locations for XP_005251423.1
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
XM_011517713.3 → XP_011516015.1 E3 ubiquitin-protein ligase RNF38 isoform X6
See identical proteins and their annotated locations for XP_011516015.1
- UniProtKB/Swiss-Prot
-
Q9H0F5
- Conserved Domains (1) summary
-
- cd16472
Location:377 → 421
- RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
-
XM_047422801.1 → XP_047278757.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_047422804.1 → XP_047278760.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_047422800.1 → XP_047278756.1 E3 ubiquitin-protein ligase RNF38 isoform X6
- Related
- ENSP00000483536.1, ENST00000611646.4
-
XM_047422797.1 → XP_047278753.1 E3 ubiquitin-protein ligase RNF38 isoform X4
-
XM_047422799.1 → XP_047278755.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_047422798.1 → XP_047278754.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_047422806.1 → XP_047278762.1 E3 ubiquitin-protein ligase RNF38 isoform X6
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
36358438..36510372 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054362003.1 → XP_054217978.1 E3 ubiquitin-protein ligase RNF38 isoform X3
-
XM_054362001.1 → XP_054217976.1 E3 ubiquitin-protein ligase RNF38 isoform X1
-
XM_054362002.1 → XP_054217977.1 E3 ubiquitin-protein ligase RNF38 isoform X2
-
XM_054362018.1 → XP_054217993.1 E3 ubiquitin-protein ligase RNF38 isoform X7
-
XM_054362019.1 → XP_054217994.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362017.1 → XP_054217992.1 E3 ubiquitin-protein ligase RNF38 isoform X7
-
XM_054362014.1 → XP_054217989.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362005.1 → XP_054217980.1 E3 ubiquitin-protein ligase RNF38 isoform X5
-
XM_054362013.1 → XP_054217988.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362015.1 → XP_054217990.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362009.1 → XP_054217984.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362007.1 → XP_054217982.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362008.1 → XP_054217983.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362006.1 → XP_054217981.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362016.1 → XP_054217991.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362011.1 → XP_054217986.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362004.1 → XP_054217979.1 E3 ubiquitin-protein ligase RNF38 isoform X4
-
XM_054362012.1 → XP_054217987.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362010.1 → XP_054217985.1 E3 ubiquitin-protein ligase RNF38 isoform X6
-
XM_054362020.1 → XP_054217995.1 E3 ubiquitin-protein ligase RNF38 isoform X6
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_194331.1: Suppressed sequence
- Description
- NM_194331.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.