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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001287527.2 → NP_001274456.1 CAP-Gly domain-containing linker protein 4 isoform 1
See identical proteins and their annotated locations for NP_001274456.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AC105398, AK023505, AK304384, AL834443, BI600762
- Consensus CDS
-
CCDS1770.1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
- Related
- ENSP00000509159.1, ENST00000693264.1
- Conserved Domains (3) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
- pfam01302
Location:487 → 551
- CAP_GLY; CAP-Gly domain
-
NM_001287528.2 → NP_001274457.1 CAP-Gly domain-containing linker protein 4 isoform 2
See identical proteins and their annotated locations for NP_001274457.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, and its 3'-terminal exon extends past a splice site that is used in variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AA429893, AF433661, AK291595, AK302325, DC317668
- Consensus CDS
-
CCDS74502.1
- UniProtKB/TrEMBL
-
A0A8I5KUB8
- Related
- ENSP00000384242.1, ENST00000401605.5
- Conserved Domains (4) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam01302
Location:488 → 551
- CAP_GLY; CAP-Gly domain
- pfam12796
Location:111 → 217
- Ank_2; Ankyrin repeats (3 copies)
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
-
NM_001410747.1 → NP_001397676.1 CAP-Gly domain-containing linker protein 4 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC093593, AC105398
- Consensus CDS
-
CCDS92728.1
- UniProtKB/TrEMBL
- A0A8I5KRK9, A0A8I5QKV0
- Related
- ENSP00000509643.1, ENST00000689070.1
-
NM_024692.6 → NP_078968.3 CAP-Gly domain-containing linker protein 4 isoform 1
See identical proteins and their annotated locations for NP_078968.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1). Both variants 1 and 2 encode the same isoform.
- Source sequence(s)
-
AC105398, AK023505, AK304384, AL834443, BI600762
- Consensus CDS
-
CCDS1770.1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
- Related
- ENSP00000327009.5, ENST00000320081.10
- Conserved Domains (3) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
- pfam01302
Location:487 → 551
- CAP_GLY; CAP-Gly domain
RNA
-
NR_109844.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses alternate 5' and 3'-terminal exons, lacks an internal exon, and uses an alternate splice site at an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AA429893, AK057267, AL834443
- Related
-
ENST00000456385.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
29097726..29183808
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005264562.3 → XP_005264619.1 CAP-Gly domain-containing linker protein 4 isoform X1
See identical proteins and their annotated locations for XP_005264619.1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
- Conserved Domains (3) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
- pfam01302
Location:487 → 551
- CAP_GLY; CAP-Gly domain
-
XM_011533110.2 → XP_011531412.1 CAP-Gly domain-containing linker protein 4 isoform X4
- UniProtKB/TrEMBL
- A0A8I5KXU9, Q4ZFY2
- Related
- ENSP00000508721.1, ENST00000687104.1
- Conserved Domains (4) summary
-
- cd00204
Location:1 → 145
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam01302
Location:381 → 444
- CAP_GLY; CAP-Gly domain
- pfam12796
Location:4 → 110
- Ank_2; Ankyrin repeats (3 copies)
- sd00045
Location:46 → 77
- ANK; ANK repeat [structural motif]
-
XM_005264563.2 → XP_005264620.1 CAP-Gly domain-containing linker protein 4 isoform X1
See identical proteins and their annotated locations for XP_005264620.1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
- Conserved Domains (3) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
- pfam01302
Location:487 → 551
- CAP_GLY; CAP-Gly domain
-
XM_006712104.3 → XP_006712167.1 CAP-Gly domain-containing linker protein 4 isoform X1
See identical proteins and their annotated locations for XP_006712167.1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
- Related
- ENSP00000385594.1, ENST00000404424.5
- Conserved Domains (3) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
- pfam01302
Location:487 → 551
- CAP_GLY; CAP-Gly domain
-
XM_047445849.1 → XP_047301805.1 CAP-Gly domain-containing linker protein 4 isoform X2
- UniProtKB/TrEMBL
- A0A8I5KUB8, A0A8I5QKP4
- Related
- ENSP00000509057.1, ENST00000686125.1
-
XM_011533109.2 → XP_011531411.1 CAP-Gly domain-containing linker protein 4 isoform X1
See identical proteins and their annotated locations for XP_011531411.1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
- Conserved Domains (3) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
- pfam01302
Location:487 → 551
- CAP_GLY; CAP-Gly domain
-
XM_017004958.2 → XP_016860447.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
- Related
- ENSP00000508552.1, ENST00000690063.1
- Conserved Domains (3) summary
-
- cd00204
Location:98 → 252
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:153 → 184
- ANK; ANK repeat [structural motif]
- pfam01302
Location:487 → 551
- CAP_GLY; CAP-Gly domain
-
XM_017004959.3 → XP_016860448.1 CAP-Gly domain-containing linker protein 4 isoform X3
- UniProtKB/TrEMBL
-
A0A8I5KUB8
-
XM_047445851.1 → XP_047301807.1 CAP-Gly domain-containing linker protein 4 isoform X5
- UniProtKB/TrEMBL
- A0A8I5KT47, G3XAK3
- Related
- ENSP00000414417.1, ENST00000415891.5
-
XM_047445848.1 → XP_047301804.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
-
XM_047445850.1 → XP_047301806.1 CAP-Gly domain-containing linker protein 4 isoform X4
- UniProtKB/TrEMBL
- A0A8I5KXU9, Q4ZFY2
- Related
- ENSP00000509274.1, ENST00000691796.1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
29141179..29227263
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054343950.1 → XP_054199925.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
-
XM_054343954.1 → XP_054199929.1 CAP-Gly domain-containing linker protein 4 isoform X4
- UniProtKB/TrEMBL
- A0A8I5KXU9, Q4ZFY2
-
XM_054343946.1 → XP_054199921.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
-
XM_054343947.1 → XP_054199922.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
-
XM_054343952.1 → XP_054199927.1 CAP-Gly domain-containing linker protein 4 isoform X2
- UniProtKB/TrEMBL
- A0A8I5KUB8, A0A8I5QKP4
-
XM_054343948.1 → XP_054199923.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
-
XM_054343951.1 → XP_054199926.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
-
XM_054343953.1 → XP_054199928.1 CAP-Gly domain-containing linker protein 4 isoform X3
- UniProtKB/TrEMBL
-
A0A8I5KUB8
-
XM_054343956.1 → XP_054199931.1 CAP-Gly domain-containing linker protein 4 isoform X5
- UniProtKB/TrEMBL
- A0A8I5KT47, G3XAK3
-
XM_054343949.1 → XP_054199924.1 CAP-Gly domain-containing linker protein 4 isoform X1
- UniProtKB/Swiss-Prot
- A0AV10, B2RMQ3, B7Z7N8, Q7Z4U3, Q8N3C7, Q96BR7, Q96MA5, Q9H7C0
- UniProtKB/TrEMBL
-
A8K6D0
-
XM_054343955.1 → XP_054199930.1 CAP-Gly domain-containing linker protein 4 isoform X4
- UniProtKB/TrEMBL
- A0A8I5KXU9, Q4ZFY2