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    SDAD1 SDA1 domain containing 1 [ Homo sapiens (human) ]

    Gene ID: 55153, updated on 9-Dec-2024

    Summary

    Official Symbol
    SDAD1provided by HGNC
    Official Full Name
    SDA1 domain containing 1provided by HGNC
    Primary source
    HGNC:HGNC:25537
    See related
    Ensembl:ENSG00000198301 AllianceGenome:HGNC:25537
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    Sda1
    Summary
    Predicted to be involved in ribosomal large subunit biogenesis and ribosomal large subunit export from nucleus. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Located in nucleolus and nucleoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in testis (RPKM 19.5), thyroid (RPKM 18.4) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SDAD1 in Genome Data Viewer
    Location:
    4q21.1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (75949915..75990945, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (79290380..79331462, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (76871068..76912098, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377285 Neighboring gene protein phosphatase with EF-hand domain 2 Neighboring gene Sharpr-MPRA regulatory region 11706 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:76829825-76830747 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:76830748-76831669 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21623 Neighboring gene N-acylethanolamine acid amidase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15483 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15484 Neighboring gene SDAD1 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76932273-76932917 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21625 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:76938237-76938736 Neighboring gene C-X-C motif chemokine ligand 9 Neighboring gene ADP-ribosyltransferase 3 (inactive) Neighboring gene C-X-C motif chemokine ligand 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ10498, DKFZp686E22207

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in ribosomal large subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in ribosomal large subunit export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     

    General protein information

    Preferred Names
    protein SDA1 homolog
    Names
    SDA1 domain-containing protein 1
    nucleolar protein 130

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001288983.2NP_001275912.1  protein SDA1 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AK024031, AK300074, BU619826, CR749574, DB047277
      Consensus CDS
      CCDS75147.1
      UniProtKB/TrEMBL
      B4DT66, E7EW05
      Related
      ENSP00000379061.4, ENST00000395711.8
      Conserved Domains (2) summary
      pfam05285
      Location:372647
      SDA1; SDA1
      pfam08158
      Location:62100
      NUC130_3NT; NUC130/3NT domain
    2. NM_001288984.2NP_001275913.1  protein SDA1 homolog isoform 3

      See identical proteins and their annotated locations for NP_001275913.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. It encodes isoform 3, which is shorter at the N-terminus, compared to isoform 1.
      Source sequence(s)
      AK024031, AK300074, BJ989617, BU619826, CR749574, DB047277
      UniProtKB/TrEMBL
      B4DT66
      Conserved Domains (1) summary
      pfam05285
      Location:312587
      SDA1; SDA1
    3. NM_018115.4NP_060585.2  protein SDA1 homolog isoform 1

      See identical proteins and their annotated locations for NP_060585.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AK001360, BC048351, BJ989617, BU619826
      Consensus CDS
      CCDS3573.2
      UniProtKB/Swiss-Prot
      Q32Q11, Q68D52, Q7Z5U4, Q9H831, Q9H9P6, Q9NVU7
      UniProtKB/TrEMBL
      B4DT66
      Related
      ENSP00000348596.5, ENST00000356260.10
      Conserved Domains (2) summary
      pfam05285
      Location:409684
      SDA1; SDA1
      pfam08158
      Location:62111
      NUC130_3NT; NUC130/3NT domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      75949915..75990945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005263102.5XP_005263159.1  protein SDA1 homolog isoform X1

      UniProtKB/TrEMBL
      B4DT66
      Conserved Domains (2) summary
      pfam05285
      Location:384659
      SDA1; SDA1
      pfam08158
      Location:3786
      NUC130_3NT; NUC130/3NT domain
    2. XM_047415888.1XP_047271844.1  protein SDA1 homolog isoform X2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      79290380..79331462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054350368.1XP_054206343.1  protein SDA1 homolog isoform X1

      UniProtKB/TrEMBL
      B4DT66
    2. XM_054350369.1XP_054206344.1  protein SDA1 homolog isoform X2