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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001288983.2 → NP_001275912.1 protein SDA1 homolog isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
- Source sequence(s)
-
AK024031, AK300074, BU619826, CR749574, DB047277
- Consensus CDS
-
CCDS75147.1
- UniProtKB/TrEMBL
- B4DT66, E7EW05
- Related
- ENSP00000379061.4, ENST00000395711.8
- Conserved Domains (2) summary
-
- pfam05285
Location:372 → 647
- SDA1; SDA1
- pfam08158
Location:62 → 100
- NUC130_3NT; NUC130/3NT domain
-
NM_001288984.2 → NP_001275913.1 protein SDA1 homolog isoform 3
See identical proteins and their annotated locations for NP_001275913.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. It encodes isoform 3, which is shorter at the N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK024031, AK300074, BJ989617, BU619826, CR749574, DB047277
- UniProtKB/TrEMBL
-
B4DT66
- Conserved Domains (1) summary
-
- pfam05285
Location:312 → 587
- SDA1; SDA1
-
NM_018115.4 → NP_060585.2 protein SDA1 homolog isoform 1
See identical proteins and their annotated locations for NP_060585.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AK001360, BC048351, BJ989617, BU619826
- Consensus CDS
-
CCDS3573.2
- UniProtKB/Swiss-Prot
- Q32Q11, Q68D52, Q7Z5U4, Q9H831, Q9H9P6, Q9NVU7
- UniProtKB/TrEMBL
-
B4DT66
- Related
- ENSP00000348596.5, ENST00000356260.10
- Conserved Domains (2) summary
-
- pfam05285
Location:409 → 684
- SDA1; SDA1
- pfam08158
Location:62 → 111
- NUC130_3NT; NUC130/3NT domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
75949915..75990945 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005263102.5 → XP_005263159.1 protein SDA1 homolog isoform X1
- UniProtKB/TrEMBL
-
B4DT66
- Conserved Domains (2) summary
-
- pfam05285
Location:384 → 659
- SDA1; SDA1
- pfam08158
Location:37 → 86
- NUC130_3NT; NUC130/3NT domain
-
XM_047415888.1 → XP_047271844.1 protein SDA1 homolog isoform X2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
79290380..79331462 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054350368.1 → XP_054206343.1 protein SDA1 homolog isoform X1
- UniProtKB/TrEMBL
-
B4DT66
-
XM_054350369.1 → XP_054206344.1 protein SDA1 homolog isoform X2