U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00839 long intergenic non-protein coding RNA 839 [ Homo sapiens (human) ]

    Gene ID: 84856, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC00839provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 839provided by HGNC
    Primary source
    HGNC:HGNC:28269
    See related
    Ensembl:ENSG00000185904 AllianceGenome:HGNC:28269
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 3.9), brain (RPKM 2.5) and 12 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00839 in Genome Data Viewer
    Location:
    10q11.21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (42475491..42495337)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (43353031..43372883)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (42970939..42990785)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene zinc finger protein 91 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3277 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3279 Neighboring gene cyclin Y like 2 (pseudogene) Neighboring gene zinc finger protein 37B, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43034693-43035194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43035195-43035694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43047054-43047592 Neighboring gene FXYD domain containing ion transport regulator 6 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026827.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK092104, AK293138, AL391099, BC007394, CK903828
      Related
      ENST00000429940.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      42475491..42495337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      43353031..43372883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_032770.3: Suppressed sequence

      Description
      NM_032770.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.