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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_054881.1 RefSeqGene
- Range
-
5019..64552
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001018089.3 → NP_001018099.1 little elongation complex subunit 2 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
- Source sequence(s)
-
AC087385, BU738348, BX647873, CN342776
- UniProtKB/Swiss-Prot
-
Q659A1
- Conserved Domains (1) summary
-
- pfam10505
Location:585 → 793
- NARG2_C; NMDA receptor-regulated gene protein 2 C-terminus
-
NM_001276385.2 → NP_001263314.1 little elongation complex subunit 2 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks several 3' exons but includes an alternate 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (c) is significantly shorter and has a distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AC087385, BC151844, CN342776
- Consensus CDS
-
CCDS61657.1
- UniProtKB/TrEMBL
- H0YK97, H0YNU9
- Related
- ENSP00000454162.1, ENST00000561114.5
-
NM_024611.6 → NP_078887.2 little elongation complex subunit 2 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AC087385, BC140894, BU738348, CN342776
- Consensus CDS
-
CCDS10176.1
- UniProtKB/Swiss-Prot
- B2RU08, Q05CT1, Q3B7W6, Q63HP4, Q658Q0, Q659A1, Q68CN8, Q6IPW7, Q6UX23, Q71H65, Q96CY5, Q9HAA2
- Related
- ENSP00000261520.4, ENST00000261520.9
- Conserved Domains (1) summary
-
- pfam10505
Location:722 → 930
- NARG2_C; NMDA receptor-regulated gene protein 2 C-terminus
RNA
-
NR_147171.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site and contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC087385, BU738348
- Related
-
ENST00000558181.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000015.10 Reference GRCh38.p14 Primary Assembly
- Range
-
60419609..60479142 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011522009.3 → XP_011520311.1 little elongation complex subunit 2 isoform X1
- UniProtKB/Swiss-Prot
- B2RU08, Q05CT1, Q3B7W6, Q63HP4, Q658Q0, Q659A1, Q68CN8, Q6IPW7, Q6UX23, Q71H65, Q96CY5, Q9HAA2
- Conserved Domains (1) summary
-
- pfam10505
Location:722 → 930
- NARG2_C; NMDA receptor-regulated gene protein 2 C-terminus
-
XM_017022569.3 → XP_016878058.1 little elongation complex subunit 2 isoform X1
- UniProtKB/Swiss-Prot
- B2RU08, Q05CT1, Q3B7W6, Q63HP4, Q658Q0, Q659A1, Q68CN8, Q6IPW7, Q6UX23, Q71H65, Q96CY5, Q9HAA2
- Conserved Domains (1) summary
-
- pfam10505
Location:722 → 930
- NARG2_C; NMDA receptor-regulated gene protein 2 C-terminus
-
XM_047433030.1 → XP_047288986.1 little elongation complex subunit 2 isoform X3
-
XM_047433029.1 → XP_047288985.1 little elongation complex subunit 2 isoform X2
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XM_047433028.1 → XP_047288984.1 little elongation complex subunit 2 isoform X2
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XM_047433027.1 → XP_047288983.1 little elongation complex subunit 2 isoform X2
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XM_047433031.1 → XP_047288987.1 little elongation complex subunit 2 isoform X4
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XM_047433032.1 → XP_047288988.1 little elongation complex subunit 2 isoform X4
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XM_047433033.1 → XP_047288989.1 little elongation complex subunit 2 isoform X5
Alternate T2T-CHM13v2.0
Genomic
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NC_060939.1 Alternate T2T-CHM13v2.0
- Range
-
58222800..58282631 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054378774.1 → XP_054234749.1 little elongation complex subunit 2 isoform X1
- UniProtKB/Swiss-Prot
- B2RU08, Q05CT1, Q3B7W6, Q63HP4, Q658Q0, Q659A1, Q68CN8, Q6IPW7, Q6UX23, Q71H65, Q96CY5, Q9HAA2
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XM_054378775.1 → XP_054234750.1 little elongation complex subunit 2 isoform X1
- UniProtKB/Swiss-Prot
- B2RU08, Q05CT1, Q3B7W6, Q63HP4, Q658Q0, Q659A1, Q68CN8, Q6IPW7, Q6UX23, Q71H65, Q96CY5, Q9HAA2
-
XM_054378773.1 → XP_054234748.1 little elongation complex subunit 2 isoform X1
- UniProtKB/Swiss-Prot
- B2RU08, Q05CT1, Q3B7W6, Q63HP4, Q658Q0, Q659A1, Q68CN8, Q6IPW7, Q6UX23, Q71H65, Q96CY5, Q9HAA2
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XM_054378779.1 → XP_054234754.1 little elongation complex subunit 2 isoform X3
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XM_054378778.1 → XP_054234753.1 little elongation complex subunit 2 isoform X2
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XM_054378777.1 → XP_054234752.1 little elongation complex subunit 2 isoform X2
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XM_054378776.1 → XP_054234751.1 little elongation complex subunit 2 isoform X2
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XM_054378780.1 → XP_054234755.1 little elongation complex subunit 2 isoform X4
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XM_054378781.1 → XP_054234756.1 little elongation complex subunit 2 isoform X4
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XM_054378782.1 → XP_054234757.1 little elongation complex subunit 2 isoform X5