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    LINC01050 long intergenic non-protein coding RNA 1050 [ Homo sapiens (human) ]

    Gene ID: 103689845, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01050provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1050provided by HGNC
    Primary source
    HGNC:HGNC:49044
    See related
    AllianceGenome:HGNC:49044
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01050 in Genome Data Viewer
    Location:
    13q14.11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (42810366..42812562, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (42030399..42032596, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (43384502..43386698, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984611 Neighboring gene family with sequence similarity 216 member B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7655 Neighboring gene long intergenic non-protein coding RNA 428 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:43442191-43442793 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:43444417-43445206 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:43446787-43447575 Neighboring gene uncharacterized LOC124903165 Neighboring gene epithelial stromal interaction 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125747.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL138819

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      42810366..42812562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      42030399..42032596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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