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    SNORD25 small nucleolar RNA, C/D box 25 [ Homo sapiens (human) ]

    Gene ID: 9303, updated on 17-Sep-2024

    Summary

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    Official Symbol
    SNORD25provided by HGNC
    Official Full Name
    small nucleolar RNA, C/D box 25provided by HGNC
    Primary source
    HGNC:HGNC:10147
    See related
    Ensembl:ENSG00000275043 MIM:603224; AllianceGenome:HGNC:10147
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U25; RNU25
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    Genomic context

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    See SNORD25 in Genome Data Viewer
    Location:
    11q12.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62855565..62855631, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62844960..62845026, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (62623037..62623103, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4864 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62623439-62624412 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62624413-62625388 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:62625389-62626362 Neighboring gene small nucleolar RNA host gene 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:62626363-62627337 Neighboring gene small nucleolar RNA, C/D box 27 Neighboring gene small nucleolar RNA, C/D box 26 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:62628506-62629410 Neighboring gene solute carrier family 3 member 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:62634014-62634172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4865 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:62648644-62649843 Neighboring gene uncharacterized LOC124902683 Neighboring gene cholinergic receptor muscarinic 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic analysis of high-risk smoldering multiple myeloma. López-Corral L, et al. Haematologica, 2012 Sep. PMID 22331267, Free PMC Article
    2. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. Frey MR, et al. Histochem Cell Biol, 1997 Oct-Nov. PMID 9387929
    3. A mammalian gene with introns instead of exons generating stable RNA products. Tycowski KT, et al. Nature, 1996 Feb 1. PMID 8559254
    4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021
    5. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. Banks CA, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609421, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • RNA, U25 small nucleolar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002565.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF081279
      Related
      ENST00000365607.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      62855565..62855631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      62844960..62845026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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