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    C1QTNF3 C1q and TNF related 3 [ Homo sapiens (human) ]

    Gene ID: 114899, updated on 27-Nov-2024

    Summary

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    Official Symbol
    C1QTNF3provided by HGNC
    Official Full Name
    C1q and TNF related 3provided by HGNC
    Primary source
    HGNC:HGNC:14326
    See related
    Ensembl:ENSG00000082196 MIM:612045; AllianceGenome:HGNC:14326
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CORS; CORCS; CTRP3; CORS26; C1ATNF3; CORS-26
    Summary
    Enables identical protein binding activity. Involved in several processes, including intracellular triglyceride homeostasis; negative regulation of non-canonical NF-kappaB signal transduction; and regulation of cytokine production. Acts upstream of or within negative regulation of gluconeogenesis. Located in extracellular exosome and membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in esophagus (RPKM 12.4), urinary bladder (RPKM 10.0) and 21 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See C1QTNF3 in Genome Data Viewer
    Location:
    5p13.2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (34017858..34244724, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (34139780..34489333, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (34017963..34244829, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene solute carrier family 45 member 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:33978101-33978993 Neighboring gene C1QTNF3-AMACR readthrough (NMD candidate) Neighboring gene proteasome 26S subunit, ATPase, 6 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15964 Neighboring gene alpha-methylacyl-CoA racemase Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34179672-34180662 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:34182107-34182256 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34182743-34183352 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:34188477-34188645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22457 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34190819-34191799 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34191800-34192781 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:34192782-34193762 Neighboring gene GUSB pseudogene 18 Neighboring gene integral membrane glycoprotein-like pseudogene Neighboring gene Sharpr-MPRA regulatory region 11513 Neighboring gene uncharacterized LOC105374719 Neighboring gene uncharacterized LOC124900957

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. RankProd Combined with Genetic Algorithm Optimized Artificial Neural Network Establishes a Diagnostic and Prognostic Prediction Model that Revealed C1QTNF3 as a Biomarker for Prostate Cancer. Hou Q, et al. EBioMedicine, 2018 Jun. PMID 29861410, Free PMC Article
    2. CTRP3 Activates the AMPK/SIRT1-PGC-1α Pathway to Protect Mitochondrial Biogenesis and Functions in Cerebral Ischemic Stroke. Gao J, et al. Neurochem Res, 2020 Dec. PMID 33098065
    3. Serum levels of C1q/TNF-related protein-3 in inflammatory bowel disease patients and its inverse association with inflammatory cytokines and insulin resistance. Mohamadinarab M, et al. IUBMB Life, 2020 Aug. PMID 32311832
    4. CTRP3 inhibits high glucose-induced oxidative stress and apoptosis in retinal pigment epithelial cells. Zhang J, et al. Artif Cells Nanomed Biotechnol, 2019 Dec. PMID 31556307
    5. CTRP3 Protects against High Glucose-Induced Cell Injury in Human Umbilical Vein Endothelial Cells. Wang F, et al. Anal Cell Pathol (Amst), 2019. PMID 31428552, Free PMC Article

    See all (79) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The relationships between biological novel biomarkers Lp-PLA2 and CTRP-3 and CVD in patients with type 2 diabetes mellitus.
      Title: The relationships between biological novel biomarkers Lp-PLA(2) and CTRP-3 and CVD in patients with type 2 diabetes mellitus.
    2. Decreased circulating CTRP3 levels in acute and chronic cardiovascular patients.
      Title: Decreased circulating CTRP3 levels in acute and chronic cardiovascular patients.
    3. Clinical Significance of Serum CTRP3 Level in the Prediction of Cardiac and Intestinal Mucosal Barrier Dysfunction in Patients with Severe Acute Pancreatitis.
      Title: Clinical Significance of Serum CTRP3 Level in the Prediction of Cardiac and Intestinal Mucosal Barrier Dysfunction in Patients with Severe Acute Pancreatitis.
    4. FOXO6 transcription inhibition of CTRP3 promotes OGD/R-triggered cardiac microvascular endothelial barrier disruption via SIRT1/Nrf2 signalling.
      Title: FOXO6 transcription inhibition of CTRP3 promotes OGD/R-triggered cardiac microvascular endothelial barrier disruption via SIRT1/Nrf2 signalling.
    5. CTRP3 attenuates inflammation, oxidative and cell death in cisplatin induced HK-2 cells.
      Title: CTRP3 attenuates inflammation, oxidative and cell death in cisplatin induced HK-2 cells.
    6. KLF10 knockdown negatively regulates CTRP3 to improve OGD/R-induced brain microvascular endothelial cell injury and barrier dysfunction through Nrf2/HO-1 signaling pathway.
      Title: KLF10 knockdown negatively regulates CTRP3 to improve OGD/R-induced brain microvascular endothelial cell injury and barrier dysfunction through Nrf2/HO-1 signaling pathway.
    7. Clinical Diagnostic Values of C1q/TNF-Related Protein-3 for Polycystic Ovary Syndrome Women with Insulin Resistance.
      Title: Clinical Diagnostic Values of C1q/TNF-Related Protein-3 for Polycystic Ovary Syndrome Women with Insulin Resistance.
    8. Adipokine C1q/Tumor Necrosis Factor- Related Protein 3 (CTRP3) Attenuates Intestinal Inflammation Via Sirtuin 1/NF-kappaB Signaling.
      Title: Adipokine C1q/Tumor Necrosis Factor- Related Protein 3 (CTRP3) Attenuates Intestinal Inflammation Via Sirtuin 1/NF-κB Signaling.
    9. CTRP3 as a novel biomarker in the plasma of Saudi children with autism.
      Title: CTRP3 as a novel biomarker in the plasma of Saudi children with autism.
    10. Exenatide increases CTRP3 gene expression in adipose cells by inhibiting adipogenesis and induces apoptosis.
      Title: Exenatide increases CTRP3 gene expression in adipose cells by inhibiting adipogenesis and induces apoptosis.
    Submit: New GeneRIF Correction See all GeneRIFs (63)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Readthrough C1QTNF3-AMACR

    Readthrough gene: C1QTNF3-AMACR, Included gene: AMACR

    Homology

    Clone Names

    • FLJ37576

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fat cell differentiation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in intracellular triglyceride homeostasis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of gluconeogenesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of gluconeogenesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of inflammatory response IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of interleukin-6 production IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of monocyte chemotactic protein-1 production IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of non-canonical NF-kappaB signal transduction IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of adiponectin secretion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of cytokine production IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular exosome HDA PubMed 
    located_in membrane HDA PubMed 

    General protein information

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    Preferred Names
    complement C1q tumor necrosis factor-related protein 3
    Names
    C1q and tumor necrosis factor related protein 3
    cartonectin
    collagenous repeat-containing sequence 26 kDa protein
    collagenous repeat-containing sequence of 26-kDa
    secretory protein CORS26
    NP_112207.1
    NP_852100.3

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030945.4 → NP_112207.1  complement C1q tumor necrosis factor-related protein 3 isoform a precursor

      See identical proteins and their annotated locations for NP_112207.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shortest transcript and encodes the shorter isoform (a).
      Source sequence(s)
      AC139783, AF329837, AK295968, BX640995
      Consensus CDS
      CCDS3904.1
      UniProtKB/Swiss-Prot
      Q0VAN4, Q542Y2, Q6MZN1, Q96KY1, Q9BXJ4
      Related
      ENSP00000231338.7, ENST00000231338.7
      Conserved Domains (2) summary
      pfam01391
      Location:71 → 113
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00386
      Location:119 → 242
      C1q; C1q domain

    2. NM_181435.6 → NP_852100.3  complement C1q tumor necrosis factor-related protein 3 isoform b precursor

      See identical proteins and their annotated locations for NP_852100.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site that results in an additional segment in the 5' coding region, compared to variant 1. The encoded isoform (b) is longer than isoform a.
      Source sequence(s)
      AC139783, AK295968, BX640995
      Consensus CDS
      CCDS34141.1
      UniProtKB/Swiss-Prot
      Q9BXJ4
      Related
      ENSP00000371497.3, ENST00000382065.8
      Conserved Domains (2) summary
      pfam01391
      Location:144 → 186
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00386
      Location:192 → 315
      C1q; C1q domain

    RNA

    1. NR_146599.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses a different 5' exon structure compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
      Source sequence(s)
      AC138409, AC139783, AC139792

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      34017858..34244724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      34139780..34489333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9BXJ4.1 GenPept UniProtKB/Swiss-Prot:Q9BXJ4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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