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    LINC01629 long intergenic non-protein coding RNA 1629 [ Homo sapiens (human) ]

    Gene ID: 105370578, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01629provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1629provided by HGNC
    Primary source
    HGNC:HGNC:52260
    See related
    Ensembl:ENSG00000258602 AllianceGenome:HGNC:52260
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    linc-KIAA1737-2
    Expression
    Biased expression in heart (RPKM 1.7), placenta (RPKM 0.2) and 2 other tissues See more
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    Genomic context

    See LINC01629 in Genome Data Viewer
    Location:
    14q24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (76959638..76965802)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (71169382..71175542)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (77425981..77432145)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 17 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:77370757-77371956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8774 Neighboring gene Sharpr-MPRA regulatory region 8364 Neighboring gene VISTA enhancer hs1466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77389998-77390993 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77390994-77391988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:77393097-77394053 Neighboring gene uncharacterized LOC124903349 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr14:77401173-77401771 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr14:77401772-77402369 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:77406282-77406782 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8776 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77419449-77420018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77420019-77420588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8777 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:77422669-77423203 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77426954-77427488 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:77427489-77428024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8781 Neighboring gene Sharpr-MPRA regulatory region 14350 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:77435045-77435585 Neighboring gene RNA, 7SL, cytoplasmic 356, pseudogene Neighboring gene ribosomal protein lateral stalk subunit P1 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_133913.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007686
      Related
      ENST00000553613.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      76959638..76965802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      71169382..71175542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)