NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001286258.2 → NP_001273187.1 homeobox protein PKNOX1 isoform 2
See identical proteins and their annotated locations for NP_001273187.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an exon in the 5' region and initiates translation from an in-frame downstream start codon compared to variant 1. The resulting isoform (2) has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AK294794, AY196965, BP369805, CN294014
- Consensus CDS
-
CCDS68211.1
- UniProtKB/TrEMBL
- B4DGV5, E7EPN6
- Related
- ENSP00000402243.2, ENST00000432907.6
- Conserved Domains (2) summary
-
- pfam05920
Location:160 → 199
- Homeobox_KN; Homeobox KN domain
- pfam16493
Location:1 → 47
- Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1
-
NM_001320694.2 → NP_001307623.1 homeobox protein PKNOX1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate, in-frame splice site in the central coding region compared to variant 1. It encodes isoform 3, which is shorter than isoform 1.
- Source sequence(s)
-
AA494396, AP001630, AY196965, BP369805, DR000771
- UniProtKB/TrEMBL
-
Q53GN9
- Conserved Domains (2) summary
-
- pfam05920
Location:276 → 315
- Homeobox_KN; Homeobox KN domain
- pfam16493
Location:80 → 165
- Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1
-
NM_004571.5 → NP_004562.2 homeobox protein PKNOX1 isoform 1
See identical proteins and their annotated locations for NP_004562.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AY196965, BC000735, BP369805, CN294014
- Consensus CDS
-
CCDS13692.1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
- Related
- ENSP00000291547.4, ENST00000291547.10
- Conserved Domains (2) summary
-
- pfam05920
Location:277 → 316
- Homeobox_KN; Homeobox KN domain
- pfam16493
Location:80 → 165
- Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000021.9 Reference GRCh38.p14 Primary Assembly
- Range
-
42974562..43033931
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047440826.1 → XP_047296782.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
-
XM_047440828.1 → XP_047296784.1 homeobox protein PKNOX1 isoform X2
- UniProtKB/TrEMBL
-
Q53GN9
-
XM_047440829.1 → XP_047296785.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
-
XM_047440830.1 → XP_047296786.1 homeobox protein PKNOX1 isoform X2
- UniProtKB/TrEMBL
-
Q53GN9
-
XM_047440827.1 → XP_047296783.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
Alternate T2T-CHM13v2.0
Genomic
-
NC_060945.1 Alternate T2T-CHM13v2.0
- Range
-
41363445..41424980
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054324552.1 → XP_054180527.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
-
XM_054324553.1 → XP_054180528.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
-
XM_054324555.1 → XP_054180530.1 homeobox protein PKNOX1 isoform X2
- UniProtKB/TrEMBL
-
Q53GN9
-
XM_054324556.1 → XP_054180531.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
-
XM_054324557.1 → XP_054180532.1 homeobox protein PKNOX1 isoform X2
- UniProtKB/TrEMBL
-
Q53GN9
-
XM_054324551.1 → XP_054180526.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
-
XM_054324554.1 → XP_054180529.1 homeobox protein PKNOX1 isoform X1
- UniProtKB/Swiss-Prot
- O00528, P55347, Q8IWT7
- UniProtKB/TrEMBL
- Q53GN9, Q96I87
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_197976.1: Suppressed sequence
- Description
- NM_197976.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.