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    LINC00593 long intergenic non-protein coding RNA 593 [ Homo sapiens (human) ]

    Gene ID: 414926, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00593provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 593provided by HGNC
    Primary source
    HGNC:HGNC:32382
    See related
    Ensembl:ENSG00000245750 AllianceGenome:HGNC:32382
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C15orf50
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00593 in Genome Data Viewer
    Location:
    15q23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (69835234..69842967)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (67657441..67665178)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (70127573..70135306)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9663 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70086634-70087136 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:70090778-70091977 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:70097321-70097517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70106110-70106935 Neighboring gene gem nuclear organelle associated protein 8 pseudogene 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:70112963-70113484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70114007-70114528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70135718-70136359 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70142408-70142923 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:70145330-70146529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70208404-70208905 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70211725-70212348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70212349-70212971 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70235717-70236216 Neighboring gene uncharacterized LOC101929129 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9666 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:70282987-70283875 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70292527-70293028 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70307241-70307744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9667 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40838 Neighboring gene uncharacterized LOC124903518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70324572-70325184

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026764.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC021818
      Related
      ENST00000560853.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      69835234..69842967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      67657441..67665178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)