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    LINC01990 long intergenic non-protein coding RNA 1990 [ Homo sapiens (human) ]

    Gene ID: 101929607, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01990provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1990provided by HGNC
    Primary source
    HGNC:HGNC:52822
    See related
    Ensembl:ENSG00000273125 AllianceGenome:HGNC:52822
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01990 in Genome Data Viewer
    Location:
    3q13.12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107430930..107463912)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (110150717..110183698)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (107149777..107182759)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene CCDC54 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:107127150-107127650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:107127651-107128151 Neighboring gene coiled-coil domain containing 54 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20202 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:107188782-107189520 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:107189521-107190259 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:107195157-107195742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20203 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14587 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14588 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14589 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20204 Neighboring gene BBX high mobility group box domain containing Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:107317361-107318183 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:107319851-107320351 Neighboring gene MPRA-validated peak4758 silencer Neighboring gene long intergenic non-protein coding RNA 635

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110039.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC063944, AC068765, BC042024
      Related
      ENST00000609293.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      107430930..107463912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      110150717..110183698
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)