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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029113.1 RefSeqGene
- Range
-
5008..13542
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001077469.3 → NP_001070937.1 nuclear receptor subfamily 1 group I member 3 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (6), also known as SV-1, uses two alternate splice sites in the 3' coding region, compared to variant 1. The resulting protein (isoform 6) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572806, CB124867
- Consensus CDS
-
CCDS44261.1
- UniProtKB/TrEMBL
-
E9PCF2
- Related
- ENSP00000412672.2, ENST00000428574.6
- Conserved Domains (2) summary
-
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
- cl11397
Location:106 → 311
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077470.3 → NP_001070938.1 nuclear receptor subfamily 1 group I member 3 isoform 11
See identical proteins and their annotated locations for NP_001070938.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (11), also known as SV-3, lacks two alternate in-frame exons and uses an alternate splice site, compared to variant 1. The resulting protein (isoform 11) is shorter, uses an upstream start codon, and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572808, CB124867
- Consensus CDS
-
CCDS53407.1
- UniProtKB/TrEMBL
-
B6ZGT2
- Related
- ENSP00000424345.1, ENST00000504010.5
- Conserved Domains (2) summary
-
- cl02596
Location:7 → 53
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
- cl11397
Location:77 → 278
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077471.3 → NP_001070939.1 nuclear receptor subfamily 1 group I member 3 isoform 5
See identical proteins and their annotated locations for NP_001070939.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5), also known as SV-5 or CAR3, lacks an alternate in-frame exon and uses an alternate splice site, compared to variant 1. The resulting protein (isoform 5) is shorter than isoform 1.
- Source sequence(s)
-
AA918394, AY572810, CB124867
- Consensus CDS
-
CCDS44262.1
- UniProtKB/TrEMBL
-
B6ZGT2
- Related
- ENSP00000356963.4, ENST00000367984.8
- Conserved Domains (2) summary
-
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
- cl11397
Location:106 → 307
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077472.3 → NP_001070940.1 nuclear receptor subfamily 1 group I member 3 isoform 9
See identical proteins and their annotated locations for NP_001070940.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (9), also known as SV-6, lacks an alternate in-frame exon in the 5' coding region and uses an alternate splice site in the 3' coding region, compared to variant 1. The resulting protein (isoform 9) is shorter, uses an upstream start codon, and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572811, CB124867
- Consensus CDS
-
CCDS41427.1
- UniProtKB/TrEMBL
-
D6REZ7
- Related
- ENSP00000356960.3, ENST00000367981.7
- Conserved Domains (2) summary
-
- cd06934
Location:77 → 322
- NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
- cl02596
Location:7 → 53
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
-
NM_001077473.3 → NP_001070941.1 nuclear receptor subfamily 1 group I member 3 isoform 12
Status: REVIEWED
- Description
- Transcript Variant: This variant (12), also known as SV-7, lacks an alternate in-frame exon in the 5' coding region and uses an alternate splice site in the 3' coding region, compared to variant 1. The resulting protein (isoform 12) is shorter, uses an upstream start codon, and has distinct N- and C-termini, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572812, CB124867
- Consensus CDS
-
CCDS53411.1
- UniProtKB/TrEMBL
-
E9PCF2
- Related
- ENSP00000399361.2, ENST00000412844.6
- Conserved Domains (2) summary
-
- cl02596
Location:7 → 53
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
- cl11397
Location:77 → 286
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077474.3 → NP_001070942.1 nuclear receptor subfamily 1 group I member 3 isoform 8
Status: REVIEWED
- Description
- Transcript Variant: This variant (8), also known as SV-8, lacks an alternate in-frame exon and uses two alternate splice sites in the 3' coding region, compared to variant 1. The resulting protein (isoform 8) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572813, CB124867
- Consensus CDS
-
CCDS53405.1
- UniProtKB/TrEMBL
-
B6ZGT2
- Related
- ENSP00000424934.1, ENST00000505005.5
- Conserved Domains (2) summary
-
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
- cl11397
Location:106 → 267
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077475.3 → NP_001070943.1 nuclear receptor subfamily 1 group I member 3 isoform 15
Status: REVIEWED
- Description
- Transcript Variant: This variant (15), also known as SV-11, lacks two alternate in-frame exons and uses two alternate splice sites, compared to variant 1. The resulting protein (isoform 15) is shorter, uses an upstream start codon, and has distinct N- and C-termini, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572816, CB124867
- Consensus CDS
-
CCDS53406.1
- UniProtKB/TrEMBL
-
E9PCF2
- Related
- ENSP00000425417.1, ENST00000512372.5
- Conserved Domains (2) summary
-
- cl02596
Location:7 → 53
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
- cl11397
Location:77 → 238
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077476.3 → NP_001070944.1 nuclear receptor subfamily 1 group I member 3 isoform 13
Status: REVIEWED
- Description
- Transcript Variant: This variant (13), also known as SV-12, lacks an alternate in-frame exon in the 5' coding region and uses two alternate splice sites in the 3' coding region, compared to variant 1. The resulting protein (isoform 13) is shorter, uses an upstream start codon, and has distinct N- and C-termini, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572817, CB124867
- Consensus CDS
-
CCDS53410.1
- UniProtKB/TrEMBL
-
E9PCF2
- Related
- ENSP00000423666.1, ENST00000508740.5
- Conserved Domains (2) summary
-
- cl02596
Location:7 → 53
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
- cl11397
Location:77 → 282
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077477.3 → NP_001070945.1 nuclear receptor subfamily 1 group I member 3 isoform 14
Status: REVIEWED
- Description
- Transcript Variant: This variant (14), also known as SV-13, lacks an alternate in-frame exon in the 5' coding region and uses three alternate splice sites in the 3' coding region, compared to variant 1. The resulting protein (isoform 14) is shorter, uses an upstream start codon, and has distinct N- and C-termini, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572818, CB124867
- Consensus CDS
-
CCDS53408.1
- UniProtKB/TrEMBL
-
E9PCF2
- Related
- ENSP00000407446.2, ENST00000437437.6
- Conserved Domains (2) summary
-
- cl02596
Location:7 → 53
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
- cl11397
Location:77 → 277
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077478.3 → NP_001070946.1 nuclear receptor subfamily 1 group I member 3 isoform 7
Status: REVIEWED
- Description
- Transcript Variant: This variant (7), also known as SV-14, uses two alternate splice sites in the 3' coding region, compared to variant 1. The resulting protein (isoform 7) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572819, CB124867
- Consensus CDS
-
CCDS44260.1
- UniProtKB/TrEMBL
-
E9PCF2
- Related
- ENSP00000406493.2, ENST00000442691.6
- Conserved Domains (2) summary
-
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
- cl11397
Location:106 → 310
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077479.3 → NP_001070947.1 nuclear receptor subfamily 1 group I member 3 isoform 10
See identical proteins and their annotated locations for NP_001070947.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (10), also known as SV-22, lacks an alternate in-frame exon in the 5' coding region and uses two alternate splice sites in the 3' coding region, compared to variant 1. The resulting protein (isoform 10) is shorter, uses an upstream start codon, and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AA918394, AY572827, CB124867
- Consensus CDS
-
CCDS53409.1
- UniProtKB/TrEMBL
-
D6REZ7
- Related
- ENSP00000427175.1, ENST00000511676.5
- Conserved Domains (2) summary
-
- cd06934
Location:77 → 317
- NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
- cl02596
Location:7 → 53
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
-
NM_001077480.3 → NP_001070948.1 nuclear receptor subfamily 1 group I member 3 isoform 2
See identical proteins and their annotated locations for NP_001070948.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, compared to variant 1. The resulting protein (isoform 2) is shorter than isoform 1.
- Source sequence(s)
-
AA918394, AL590714, BC069626, CB124867
- Consensus CDS
-
CCDS41430.1
- UniProtKB/Swiss-Prot
- E9PB75, E9PC13, E9PDU3, E9PGH6, E9PH10, E9PHC8, E9PHN4, F1D8Q0, F1D8Q1, Q0VAC9, Q14994, Q4U0F0, Q5VTW5, Q5VTW6, Q6GZ68, Q6GZ76, Q6GZ77, Q6GZ78, Q6GZ79, Q6GZ82, Q6GZ83, Q6GZ84, Q6GZ85, Q6GZ87, Q6GZ89
- UniProtKB/TrEMBL
-
B6ZGT2
- Related
- ENSP00000356961.4, ENST00000367982.8
- Conserved Domains (2) summary
-
- cd06934
Location:106 → 350
- NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
-
NM_001077481.3 → NP_001070949.1 nuclear receptor subfamily 1 group I member 3 isoform 4
See identical proteins and their annotated locations for NP_001070949.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting protein (isoform 4) is shorter than isoform 1.
- Source sequence(s)
-
AA918394, AL590714, BC121120, CB124867
- Consensus CDS
-
CCDS41428.1
- UniProtKB/TrEMBL
-
B6ZGT2
- Related
- ENSP00000356965.3, ENST00000367985.7
- Conserved Domains (2) summary
-
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
- cl11397
Location:106 → 312
- NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
-
NM_001077482.3 → NP_001070950.1 nuclear receptor subfamily 1 group I member 3 isoform 1
See identical proteins and their annotated locations for NP_001070950.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1), also known as SV-25 or CAR2, represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AA918394, BC121120, CB124867, DQ022681
- Consensus CDS
-
CCDS41429.1
- UniProtKB/TrEMBL
-
B6ZGT2
- Related
- ENSP00000356959.2, ENST00000367980.6
- Conserved Domains (2) summary
-
- cd06934
Location:106 → 355
- NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
-
NM_005122.5 → NP_005113.1 nuclear receptor subfamily 1 group I member 3 isoform 3
See identical proteins and their annotated locations for NP_005113.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3), also known as WT or REF, uses two alternate splice sites in the 3' coding region, compared to variant 1. The resulting protein (isoform 3) is shorter than isoform 1.
- Source sequence(s)
-
CB124867, Z30425
- Consensus CDS
-
CCDS1228.1
- UniProtKB/TrEMBL
-
B6ZGT2
- Related
- ENSP00000356962.5, ENST00000367983.9
- Conserved Domains (2) summary
-
- cd06934
Location:106 → 346
- NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
161229669..161238203 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005245693.5 → XP_005245750.2 nuclear receptor subfamily 1 group I member 3 isoform X2
-
XM_005245697.5 → XP_005245754.1 nuclear receptor subfamily 1 group I member 3 isoform X1
See identical proteins and their annotated locations for XP_005245754.1
- UniProtKB/TrEMBL
- B6ZGT2, F1DAL4
- Conserved Domains (2) summary
-
- cd06934
Location:106 → 351
- NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
- cd07156
Location:11 → 82
- NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
160367115..160375669 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054339984.1 → XP_054195959.1 nuclear receptor subfamily 1 group I member 3 isoform X2
-
XM_054339983.1 → XP_054195958.1 nuclear receptor subfamily 1 group I member 3 isoform X1
- UniProtKB/TrEMBL
-
F1DAL4