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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001145457.3 → NP_001138929.2 natural cytotoxicity triggering receptor 1 isoform b precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region compared to variant 1. This results in a shorter protein (isoform b) compared to isoform a.
- Source sequence(s)
-
AC011476, AC245128, AJ001383, BC064806
- Consensus CDS
-
CCDS46181.1
- UniProtKB/TrEMBL
- A0A0A0MTU0, M0QYD1
- Related
- ENSP00000471986.1, ENST00000594765.5
- Conserved Domains (2) summary
-
- cd05711
Location:123 → 210
- Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
- cd05751
Location:27 → 118
- Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
-
NM_001145458.3 → NP_001138930.2 natural cytotoxicity triggering receptor 1 isoform c precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform c) compared to isoform a.
- Source sequence(s)
-
AC011476, AC245128, AJ001383, AJ006121
- Consensus CDS
-
CCDS46182.1
- UniProtKB/TrEMBL
- A0A0A0MR94, M0QYD1
- Related
- ENSP00000339515.4, ENST00000338835.9
- Conserved Domains (2) summary
-
- cd05711
Location:123 → 210
- Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
- cd05751
Location:27 → 118
- Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
-
NM_001242356.3 → NP_001229285.1 natural cytotoxicity triggering receptor 1 isoform d precursor
See identical proteins and their annotated locations for NP_001229285.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate exon in the 5' coding region compared variant 1. The resulting protein (isoform d) is shorter but has the same N- and C-termini compared to isoform a.
- Source sequence(s)
-
AC011476, AC245128, AJ001383, AJ006123
- Consensus CDS
-
CCDS56103.1
- UniProtKB/Swiss-Prot
-
O76036
- Related
- ENSP00000344358.4, ENST00000350790.9
- Conserved Domains (1) summary
-
- cd05711
Location:28 → 115
- Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
-
NM_001242357.3 → NP_001229286.1 natural cytotoxicity triggering receptor 1 isoform e precursor
See identical proteins and their annotated locations for NP_001229286.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks two alternate exons in the coding region compared to variant 1. The resulting protein (isoform e) is shorter but has the same N- and C-termini compared to isoform a.
- Source sequence(s)
-
AC011476, AC245128, AJ001383, AJ006123
- UniProtKB/Swiss-Prot
-
O76036
- Conserved Domains (1) summary
-
- cd05711
Location:28 → 115
- Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
-
NM_004829.7 → NP_004820.2 natural cytotoxicity triggering receptor 1 isoform a precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AC011476, AC245128, AJ001383
- Consensus CDS
-
CCDS12911.1
- UniProtKB/Swiss-Prot
- B0V3L2, B0V3L3, B0V3L4, B0V3L5, B8JL03, O76016, O76017, O76018, O76036
- UniProtKB/TrEMBL
- A0A0A0MQZ0, A0A0G2JN91, M0QYD1
- Related
- ENSP00000291890.3, ENST00000291890.9
- Conserved Domains (2) summary
-
- cd05711
Location:123 → 210
- Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
- cd05751
Location:27 → 118
- Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p14 Primary Assembly
- Range
-
54898198..54938208
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047439727.1 → XP_047295683.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_011527530.4 → XP_011525832.1 natural cytotoxicity triggering receptor 1 isoform X2
- UniProtKB/TrEMBL
-
A0A0G2JM44
- Conserved Domains (2) summary
-
- cd05711
Location:123 → 210
- Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
- cd05751
Location:27 → 118
- Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
-
XM_011527529.4 → XP_011525831.1 natural cytotoxicity triggering receptor 1 isoform X1
- UniProtKB/TrEMBL
-
A0A0G2JM44
- Conserved Domains (2) summary
-
- cd05711
Location:123 → 210
- Ig_FcalphaRI; Immunoglobulin (IG)-like domain of of FcalphaRI
- cd05751
Location:27 → 118
- Ig1_LILRB1_like; First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins
Reference GRCh38.p14 PATCHES
Genomic
-
NW_016107304.1 Reference GRCh38.p14 PATCHES
- Range
-
235221..239170
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 PATCHES
Genomic
-
NW_016107312.1 Reference GRCh38.p14 PATCHES
- Range
-
1889..5838 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_1
Genomic
-
NW_003571054.1 Reference GRCh38.p14 ALT_REF_LOCI_1
- Range
-
801588..841606
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054329706.1 → XP_054185681.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054329705.1 → XP_054185680.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054329704.1 → XP_054185679.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_2
Genomic
-
NW_003571055.2 Reference GRCh38.p14 ALT_REF_LOCI_2
- Range
-
543372..584149
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330207.1 → XP_054186182.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054330206.1 → XP_054186181.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054330205.1 → XP_054186180.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_3
Genomic
-
NW_003571056.2 Reference GRCh38.p14 ALT_REF_LOCI_3
- Range
-
878176..918933
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330503.1 → XP_054186478.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054330502.1 → XP_054186477.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054330501.1 → XP_054186476.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_4
Genomic
-
NW_003571057.2 Reference GRCh38.p14 ALT_REF_LOCI_4
- Range
-
905713..946470
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330753.1 → XP_054186728.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054330752.1 → XP_054186727.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054330751.1 → XP_054186726.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_5
Genomic
-
NW_003571058.2 Reference GRCh38.p14 ALT_REF_LOCI_5
- Range
-
880262..921019
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330984.1 → XP_054186959.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054330983.1 → XP_054186958.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054330982.1 → XP_054186957.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_6
Genomic
-
NW_003571059.2 Reference GRCh38.p14 ALT_REF_LOCI_6
- Range
-
816555..856573
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054331267.1 → XP_054187242.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054331266.1 → XP_054187241.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054331265.1 → XP_054187240.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_7
Genomic
-
NW_003571060.1 Reference GRCh38.p14 ALT_REF_LOCI_7
- Range
-
802558..842560
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054331537.1 → XP_054187512.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054331536.1 → XP_054187511.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054331535.1 → XP_054187510.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_8
Genomic
-
NW_003571061.2 Reference GRCh38.p14 ALT_REF_LOCI_8
- Range
-
610351..651108
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054333581.1 → XP_054189556.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054333580.1 → XP_054189555.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054333579.1 → XP_054189554.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_9
Genomic
-
NT_187693.1 Reference GRCh38.p14 ALT_REF_LOCI_9
- Range
-
880672..920690
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054333683.1 → XP_054189658.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054333682.1 → XP_054189657.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054333681.1 → XP_054189656.1 natural cytotoxicity triggering receptor 1 isoform X1
Reference GRCh38.p14 ALT_REF_LOCI_23
Genomic
-
NT_187671.1 Reference GRCh38.p14 ALT_REF_LOCI_23
- Range
-
185095..189044
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_26
Genomic
-
NT_187674.1 Reference GRCh38.p14 ALT_REF_LOCI_26
- Range
-
192168..196117
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_27
Genomic
-
NT_187675.1 Reference GRCh38.p14 ALT_REF_LOCI_27
- Range
-
276387..280336
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_28
Genomic
-
NT_187676.1 Reference GRCh38.p14 ALT_REF_LOCI_28
- Range
-
182098..186047
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_29
Genomic
-
NT_187677.1 Reference GRCh38.p14 ALT_REF_LOCI_29
- Range
-
183515..187464
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_30
Genomic
-
NT_187683.1 Reference GRCh38.p14 ALT_REF_LOCI_30
- Range
-
180366..184315
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060943.1 Alternate T2T-CHM13v2.0
- Range
-
57992503..58033237
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054322692.1 → XP_054178667.1 natural cytotoxicity triggering receptor 1 isoform X3
-
XM_054322691.1 → XP_054178666.1 natural cytotoxicity triggering receptor 1 isoform X2
-
XM_054322690.1 → XP_054178665.1 natural cytotoxicity triggering receptor 1 isoform X1