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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001146310.2 → NP_001139782.1 Fanconi anemia core complex-associated protein 20 isoform 1
See identical proteins and their annotated locations for NP_001139782.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) shares a central coding exon but includes alternate exon structure in both its 5' and 3' regions, and it thus differs in both UTRs and in the coding region, compared to variant 2. The encoded isoform (1) is distinct and longer, compared to isoform 2, but it shares regions in common with isoforms 3 and 5.
- Source sequence(s)
-
AK127994
- UniProtKB/TrEMBL
-
Q6ZRT9
- Related
-
ENST00000469733.5
- Conserved Domains (1) summary
-
- PRK12323
Location:63 → 176
- PRK12323; DNA polymerase III subunits gamma and tau; Provisional
-
NM_001256945.2 → NP_001243874.2 Fanconi anemia core complex-associated protein 20 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon that results in a frameshift in the 5' and subsequent coding region, and it uses an alternate 3' exon and thus differs in the 3' UTR, compared to variant 2. The encoded isoform (3) has a distinct C-terminus and is longer than isoform 2.
- Source sequence(s)
-
AL590822
- Consensus CDS
-
CCDS72686.1
- UniProtKB/TrEMBL
-
F6S8H2
- Related
- ENSP00000383710.4, ENST00000400919.7
- Conserved Domains (1) summary
-
- PRK12323
Location:1 → 135
- PRK12323; DNA polymerase III subunit gamma/tau
-
NM_001256946.2 → NP_001243875.2 Fanconi anemia core complex-associated protein 20 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate 3' exon and it thus differs in the 3' coding region and 3' UTR, compared to variant 2. The encoded isoform (4) has a distinct C-terminus and is longer than isoform 2.
- Source sequence(s)
-
AL590822
- UniProtKB/TrEMBL
-
H7C361
- Related
- ENSP00000409721.1, ENST00000420515.1
- Conserved Domains (2) summary
-
- pfam15750
Location:144 → 157
- UBZ_FAAP20; Ubiquitin-binding zinc-finger
- pfam15751
Location:35 → 139
- FANCA_interact; FAAP20 FANCA interaction domain
-
NM_001256947.2 → NP_001243876.2 Fanconi anemia core complex-associated protein 20 isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks an alternate exon that results in a frameshift in the 5' and subsequent coding region, compared to variant 2. The encoded isoform (5) has a distinct C-terminus and is shorter than isoform 2.
- Source sequence(s)
-
AL590822
- Consensus CDS
-
CCDS57965.1
- Related
- ENSP00000367804.2, ENST00000378543.2
-
NM_001282670.2 → NP_001269599.1 Fanconi anemia core complex-associated protein 20 isoform 6
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) contains an alternate 5' exon structure and it thus differs in the 5' UTR and 5' coding region, compared to variant 2. The encoded isoform (6) has a distinct and longer N-terminus than isoform 2.
- Source sequence(s)
-
AK126870, AL590822, BC066360, BU542153
- UniProtKB/Swiss-Prot
-
Q6NZ36
- Related
-
ENST00000487186.5
- Conserved Domains (2) summary
-
- pfam15750
Location:248 → 281
- UBZ_FAAP20; Ubiquitin-binding zinc-finger
- pfam15751
Location:138 → 242
- FANCA_interact; FAAP20 FANCA interaction domain
-
NM_001282671.2 → NP_001269600.1 Fanconi anemia core complex-associated protein 20 isoform 7
See identical proteins and their annotated locations for NP_001269600.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) uses alternate exon structure in its 3' region, compared to variant 2. The encoded isoform (7) is distinct and shorter, compared to isoform 2, but it shares regions in common with isoforms 1 and 3. Both variants 7 and 8 encode the same isoform (7).
- Source sequence(s)
-
AL590822
- UniProtKB/TrEMBL
-
Q7Z4P6
-
NM_001282672.2 → NP_001269601.1 Fanconi anemia core complex-associated protein 20 isoform 7
See identical proteins and their annotated locations for NP_001269601.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) uses alternate exon structure in its 3' region, compared to variant 2. The encoded isoform (7) is distinct and shorter, compared to isoform 2, but it shares regions in common with isoforms 1 and 3. Both variants 7 and 8 encode the same isoform (7).
- Source sequence(s)
-
AL590822
- UniProtKB/TrEMBL
-
Q7Z4P6
-
NM_001282673.2 → NP_001269602.2 Fanconi anemia core complex-associated protein 20 isoform 8
Status: VALIDATED
- Description
- Transcript Variant: This variant (10) uses an alternate 3' exon structure and it thus differs in the 3' coding region and 3' UTR, compared to variant 2. The encoded isoform (8) has a distinct C-terminus and is shorter than isoform 2.
- Source sequence(s)
-
AL590822
- Consensus CDS
-
CCDS72687.1
- UniProtKB/TrEMBL
-
H7C361
- Related
- ENSP00000383709.3, ENST00000400918.7
- Conserved Domains (2) summary
-
- pfam15750
Location:144 → 158
- UBZ_FAAP20; Ubiquitin-binding zinc-finger
- pfam15751
Location:35 → 139
- FANCA_interact; FAAP20 FANCA interaction domain
-
NM_182533.4 → NP_872339.3 Fanconi anemia core complex-associated protein 20 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) encodes isoform 2.
- Source sequence(s)
-
AL590822
- Consensus CDS
-
CCDS38.2
- UniProtKB/Swiss-Prot
- A6PW39, A6PW40, A6PW41, A8MQT6, F2Z2L4, Q6NZ36, Q6ZT64, Q71M24, Q96ND7
- UniProtKB/TrEMBL
-
H7C361
- Related
- ENSP00000367808.4, ENST00000378546.9
- Conserved Domains (2) summary
-
- pfam15750
Location:144 → 178
- UBZ_FAAP20; Ubiquitin-binding zinc-finger
- pfam15751
Location:35 → 139
- FANCA_interact; FAAP20 FANCA interaction domain
RNA
-
NR_046427.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) includes an additional internal exon, compared to variant 2. This variant is represented as non-coding because use of the expected translational start codon, as used in variant 2, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL590822
- Related
-
ENST00000440825.6
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NR_024445.1: Suppressed sequence
- Description
- NR_024445.1: This RefSeq was permanently suppressed because it is primarily intronic sequence.