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    ZNF503-AS2 ZNF503 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 100131213, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ZNF503-AS2provided by HGNC
    Official Full Name
    ZNF503 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:23525
    See related
    Ensembl:ENSG00000237149 AllianceGenome:HGNC:23525
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C10orf41; NCRNA00245
    Expression
    Broad expression in kidney (RPKM 3.2), adrenal (RPKM 1.8) and 22 other tissues See more
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    Genomic context

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    See ZNF503-AS2 in Genome Data Viewer
    Location:
    10q22.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (75401528..75408982)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (76275578..76283032)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (77161286..77168740)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene zinc finger protein 503 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:77142242-77143441 Neighboring gene uncharacterized LOC124902461 Neighboring gene sperm autoantigenic protein 17 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:77160524-77161024 Neighboring gene VISTA enhancer hs484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:77165968-77166707 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:77166708-77167448 Neighboring gene uncharacterized LOC101929234 Neighboring gene uncharacterized LOC107984293 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:77191190-77191690

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence and comparative analysis of human chromosome 10. Deloukas P, et al. Nature, 2004 May 27. PMID 15164054
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • ZNF503 antisense RNA 2 (non-protein coding)

    Clone Names

    • FLJ00096

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024421.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC010997, AW449476, BC029963, BI522594

    2. NR_024422.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC010997, AW449476, BC029963, BJ990170

    3. NR_110299.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC010997, AW449476, BC017426
      Related
      ENST00000425916.4

    4. NR_110300.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC010997, AW449476, BC029963

    5. NR_110301.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC010997

    6. NR_110302.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC010997, AW449476, DA634630

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      75401528..75408982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      76275578..76283032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6NEH8.1 GenPept UniProtKB/Swiss-Prot:A6NEH8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials