U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TTC7B-AS1 TTC7B antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928909, updated on 28-Oct-2024

    Summary

    Official Symbol
    TTC7B-AS1provided by HGNC
    Official Full Name
    TTC7B antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56196
    See related
    Ensembl:ENSG00000259163 AllianceGenome:HGNC:56196
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 1.6), brain (RPKM 0.7) and 18 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TTC7B-AS1 in Genome Data Viewer
    Location:
    14q32.11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (90642629..90648891)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (84867780..84874040)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (91108973..91115235)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903359 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:90975958-90976791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90978459-90979291 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90979510-90980022 Neighboring gene Sharpr-MPRA regulatory region 509 Neighboring gene uncharacterized LOC105370619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90984266-90985000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90985001-90985735 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90989062-90989923 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90999515-91000015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91000050-91000880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91005194-91005707 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91005708-91006220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91012381-91012922 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:91020548-91020710 Neighboring gene tetratricopeptide repeat domain 7B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91035910-91036410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91036411-91036911 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:91037691-91038890 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:91040724-91041597 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91081381-91081902 Neighboring gene Sharpr-MPRA regulatory region 13818 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91091763-91092395 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91105894-91106408 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:91108217-91108821 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:91108822-91109426 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:91112734-91113933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91148618-91149118 Neighboring gene uncharacterized LOC105370622 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:91187652-91188851 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6012 Neighboring gene uncharacterized LOC124903360

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110134.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA639311, BC028598, HY025890
      Related
      ENST00000557007.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      90642629..90648891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      84867780..84874040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)