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    2200002J24Rik RIKEN cDNA 2200002J24 gene [ Mus musculus (house mouse) ]

    Gene ID: 69147, updated on 2-Nov-2024

    Summary

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    Official Symbol
    2200002J24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2200002J24 geneprovided by MGI
    Primary source
    MGI:MGI:1916397
    See related
    Ensembl:ENSMUSG00000013083 AllianceGenome:MGI:1916397
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be active in membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 19.3), stomach adult (RPKM 4.1) and 2 other tissues See more
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    Genomic context

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    See 2200002J24Rik in Genome Data Viewer
    Location:
    7 B1; 7 19.2 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (30398311..30409723)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (30698886..30710298)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene PMIS2 transmembrane protein Neighboring gene predicted gene, 53357 Neighboring gene STARR-positive B cell enhancer ABC_E9108 Neighboring gene ATPase, H+/K+ exchanging, gastric, alpha polypeptide Neighboring gene transmembrane protein 147

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69147

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026961.2 → NP_081237.1  uncharacterized protein LOC69147

      See identical proteins and their annotated locations for NP_081237.1

      Status: VALIDATED

      Source sequence(s)
      AK008620, BC048568
      Consensus CDS
      CCDS21107.1
      UniProtKB/TrEMBL
      Q9D807
      Related
      ENSMUSP00000159561.1, ENSMUST00000207565.2
      Conserved Domains (1) summary
      pfam04505
      Location:36 → 100
      CD225; Interferon-induced transmembrane protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      30398311..30409723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312282.1 → XP_017167771.1  uncharacterized protein LOC69147 isoform X1

      Conserved Domains (1) summary
      COG2157
      Location:85 → 167
      RPL20A; Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

    2. XM_017312281.1 → XP_017167770.1  uncharacterized protein LOC69147 isoform X1

      Conserved Domains (1) summary
      COG2157
      Location:85 → 167
      RPL20A; Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

    3. XM_017312283.1 → XP_017167772.1  uncharacterized protein LOC69147 isoform X1

      Conserved Domains (1) summary
      COG2157
      Location:85 → 167
      RPL20A; Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein Strain
    Heading Accession and Version

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