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    GARIN5B golgi associated RAB2 interactor family member 5B [ Homo sapiens (human) ]

    Gene ID: 284418, updated on 17-Sep-2024

    Summary

    Official Symbol
    GARIN5Bprovided by HGNC
    Official Full Name
    golgi associated RAB2 interactor family member 5Bprovided by HGNC
    Primary source
    HGNC:HGNC:25278
    See related
    Ensembl:ENSG00000180043 AllianceGenome:HGNC:25278
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM71E2; C19orf16
    Expression
    Restricted expression toward testis (RPKM 16.6) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See GARIN5B in Genome Data Viewer
    Location:
    19q13.42
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (55354908..55363260, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (58450414..58458745, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (55866276..55874628, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15090 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11022 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11023 Neighboring gene lysine methyltransferase 5C Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55855204-55856008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55856009-55856814 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55858005-55858699 Neighboring gene cytochrome c oxidase subunit 6B2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11024 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15091 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55871113-55871613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55874435-55875039 Neighboring gene interleukin 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55880086-55880927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55881771-55882611 Neighboring gene CRISPRi-validated cis-regulatory element chr19.6204 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:55885919-55886140 Neighboring gene transmembrane protein 190

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    Golgi-associated RAB2 interactor protein 5B
    Names
    Golgi associated RAB2 interactor protein 5B
    family with sequence similarity 71 member E2
    protein FAM71E2
    putative protein FAM71E2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145402.2NP_001138874.1  Golgi-associated RAB2 interactor protein 5B

      See identical proteins and their annotated locations for NP_001138874.1

      Status: VALIDATED

      Source sequence(s)
      AC020922, AK127979, AL834316, BC031875, KF573705
      UniProtKB/Swiss-Prot
      Q8N5Q1, Q8ND99
      Related
      ENSP00000398617.1, ENST00000424985.3
      Conserved Domains (3) summary
      PHA03247
      Location:363616
      PHA03247; large tegument protein UL36; Provisional
      PRK14951
      Location:423546
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      pfam12480
      Location:98159
      DUF3699; Protein of unknown function (DUF3699)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      55354908..55363260 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      58450414..58458745 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)