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    6430550D23Rik RIKEN cDNA 6430550D23 gene [ Mus musculus (house mouse) ]

    Gene ID: 320095, updated on 9-Aug-2024

    Summary

    Official Symbol
    6430550D23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6430550D23 geneprovided by MGI
    Primary source
    MGI:MGI:2443361
    See related
    Ensembl:ENSMUSG00000074646 AllianceGenome:MGI:2443361
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Orthologous to human C20orf173 (chromosome 20 open reading frame 173). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 3.4), subcutaneous fat pad adult (RPKM 0.8) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 6430550D23Rik in Genome Data Viewer
    Location:
    2 H1; 2 77.26 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (155831465..155850315, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (155989545..156008125, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene growth differentiation factor 5 Neighboring gene STARR-seq mESC enhancer starr_06152 Neighboring gene centrosomal protein 250 Neighboring gene predicted gene, 50621 Neighboring gene STARR-positive B cell enhancer ABC_E9074 Neighboring gene ERGIC and golgi 3 Neighboring gene fer-1 like family member 4 Neighboring gene AE binding protein 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in ganglioside biosynthetic process via lactosylceramide IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sialylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C20orf173 homolog
    Names
    likely orthologue of H. sapiens chromosome 20 open reading frame 173 (C20orf173)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145351.1NP_001138823.1  uncharacterized protein C20orf173 homolog isoform 1 precursor

      See identical proteins and their annotated locations for NP_001138823.1

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL833786, AV496044
      Consensus CDS
      CCDS50775.1
      UniProtKB/TrEMBL
      A3KGJ9, B7ZCN6
      Related
      ENSMUSP00000115643.3, ENSMUST00000139116.9
    2. NM_001145352.2NP_001138824.1  uncharacterized protein C20orf173 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL833786
      Consensus CDS
      CCDS50774.1
      UniProtKB/TrEMBL
      B7ZCN5, D6RHS0
      Related
      ENSMUSP00000083314.4, ENSMUST00000086145.10
    3. NM_001408012.1NP_001394941.1  uncharacterized protein C20orf173 homolog isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AL833786
      UniProtKB/TrEMBL
      A3KGJ9, B7ZCN6
    4. NM_001408013.1NP_001394942.1  uncharacterized protein C20orf173 homolog isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AL833786
      UniProtKB/TrEMBL
      A3KGJ9, B7ZCN6
    5. NM_001408014.1NP_001394943.1  uncharacterized protein C20orf173 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL833786
      UniProtKB/TrEMBL
      B7ZCN5, D6RHS0
    6. NM_001408015.1NP_001394944.1  uncharacterized protein C20orf173 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL833786
      UniProtKB/TrEMBL
      B7ZCN5, D6RHS0
      Related
      ENSMUST00000138025.2
    7. NM_001408016.1NP_001394945.1  uncharacterized protein C20orf173 homolog isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL833786
      UniProtKB/TrEMBL
      A3KGK0

    RNA

    1. NR_176443.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL833786
    2. NR_176444.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL833786

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      155831465..155850315 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251751.2XP_030107611.1  uncharacterized protein C20orf173 homolog isoform X1

      UniProtKB/TrEMBL
      A3KGJ9, B7ZCN6
    2. XM_006499730.5XP_006499793.1  uncharacterized protein C20orf173 homolog isoform X1

      See identical proteins and their annotated locations for XP_006499793.1

      UniProtKB/TrEMBL
      A3KGJ9, B7ZCN6
      Related
      ENSMUSP00000118982.3, ENSMUST00000140657.9
    3. XM_006499729.5XP_006499792.1  uncharacterized protein C20orf173 homolog isoform X1

      See identical proteins and their annotated locations for XP_006499792.1

      UniProtKB/TrEMBL
      A3KGJ9, B7ZCN6
    4. XM_006499732.4XP_006499795.1  uncharacterized protein C20orf173 homolog isoform X2

      See identical proteins and their annotated locations for XP_006499795.1

      UniProtKB/TrEMBL
      A3KGK0
      Related
      ENSMUSP00000120293.2, ENSMUST00000144686.8

    RNA

    1. XR_866295.4 RNA Sequence