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    LOC4335954 PHD finger protein ALFIN-LIKE 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335954, updated on 10-Oct-2024

    Summary

    Gene symbol
    LOC4335954
    Gene description
    PHD finger protein ALFIN-LIKE 4-like
    Locus tag
    OSNPB_040444900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_14937
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 11.7), flower buds (RPKM 11.5) and 6 other tissues See more
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    Genomic context

    See LOC4335954 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22678096..22680912)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22189007..22191742)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable methyltransferase At1g29790 Neighboring gene ferric reduction oxidase 7, chloroplastic Neighboring gene potassium channel KOR2-like Neighboring gene 23.2 kDa heat shock protein-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    pHD finger protein ALFIN-LIKE 4
    Names
    LOC_Os04g36730
    OSJNBa0027P08.7
    PHD finger protein ALFIN-LIKE 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419358.1NP_001406287.1  pHD finger protein ALFIN-LIKE 4

      Status: VALIDATED

      Source sequence(s)
      CB649988, CI078234
      UniProtKB/Swiss-Prot
      A0A0P0WAL5, Q7XUW3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22678096..22680912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)