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    LOC4335963 sm-like protein LSM1B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335963, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335963
    Gene description
    sm-like protein LSM1B
    Locus tag
    OSNPB_040445800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335963 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22712810..22716165)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22223718..22227191)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene trihelix transcription factor ENAP2 Neighboring gene 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic Neighboring gene protein LURP-one-related 6 Neighboring gene pentatricopeptide repeat-containing protein At2g06000 Neighboring gene uncharacterized LOC4335966

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sm-like protein LSM1B
    Names
    Os04g0445800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22712810..22716165
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778094.3 → XP_015633580.1  sm-like protein LSM1B

      UniProtKB/TrEMBL
      B8AUC9, B9FFE2, Q01J34, Q0JCW8, Q7XUX0
      Conserved Domains (1) summary
      cd01728
      Location:13 → 83
      LSm1; Like-Sm protein 1
    Nucleotide Protein
    Heading Accession and Version

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