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    LOC4347257 bZIP transcription factor TRAB1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347257, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347257
    Gene description
    bZIP transcription factor TRAB1-like
    Locus tag
    OSNPB_090456200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347257 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21570888..21574806)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17189948..17194013)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene tuliposide A-converting enzyme b1, amyloplastic Neighboring gene uncharacterized LOC4347256 Neighboring gene uncharacterized LOC136351913 Neighboring gene uncharacterized LOC4347258

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor TRAB1-like
    Names
    B1342C04.26
    Os09g0456200
    P0025H07.45
    putative bZIP transcription factor ABI5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      21570888..21574806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757064.3 → XP_015612550.1  bZIP transcription factor TRAB1-like

      UniProtKB/TrEMBL
      A0A0P0XMS6, B8BCK8, Q67TQ5
      Conserved Domains (1) summary
      cd14707
      Location:297 → 349
      bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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