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    LOC4350785 sec-independent protein translocase protein TATB, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350785, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350785
    Gene description
    sec-independent protein translocase protein TATB, chloroplastic-like
    Locus tag
    OSNPB_110580800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TATB; HCF106; OsJ_34377
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    Genomic context

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    See LOC4350785 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (23855804..23859054, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (21920183..21923368, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene pumilio domain-containing protein C6G9.14 Neighboring gene protein SINE1 Neighboring gene uncharacterized LOC112936882 Neighboring gene protein LIFEGUARD 1 Neighboring gene uncharacterized LOC107276261

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport by the Tat complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sec-independent protein translocase protein TATB, chloroplastic
    Names
    LOC_Os11g37130
    Protein HIGH CHLOROPHYLL FLUORESCENCE 106
    Protein TWIN-ARGININE TRANSLOCATION B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423424.1 → NP_001410353.1  sec-independent protein translocase protein TATB, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK059555, CB659707, CI561650
      UniProtKB/Swiss-Prot
      A0A0P0Y3P9, Q2R237
      UniProtKB/TrEMBL
      B8BL86

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      23855804..23859054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021230.2 → XP_025877015.1  sec-independent protein translocase protein TATB, chloroplastic isoform X1

      Conserved Domains (1) summary
      cl00788
      Location:78 → 169
      MttA_Hcf106; mttA/Hcf106 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2R237.2 GenPept UniProtKB/Swiss-Prot:Q2R237

    Gene LinkOut

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    Research Materials