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    LOC4351050 peptide chain release factor APG3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351050, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4351050
    Gene description
    peptide chain release factor APG3, chloroplastic
    Locus tag
    OSNPB_110657100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 42.0), roots after flowering (RPKM 18.5) and 5 other tissues See more
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    Genomic context

    See LOC4351050 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (28267264..28271614)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (26306053..26310436)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene glutaredoxin pseudogene Neighboring gene acyl-CoA-binding domain-containing protein 6-like Neighboring gene alkylated DNA repair protein ALKBH8 homolog Neighboring gene probable small nuclear ribonucleoprotein F

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables translation release factor activity, codon specific IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in chloroplast organization IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in plastid translation IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in thylakoid membrane organization IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in translational termination IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    peptide chain release factor APG3, chloroplastic
    Names
    Os11g0657100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      28267264..28271614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761744.3XP_015617230.1  peptide chain release factor APG3, chloroplastic

      UniProtKB/TrEMBL
      A0A8J8YAI7, B8BLN3, B9G8N5, Q0IRA8, Q2R068
      Conserved Domains (1) summary
      PRK00591
      Location:51408
      prfA; peptide chain release factor 1; Validated