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    LOC4330066 small ribosomal subunit protein mL103 (rPPR7) [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330066, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330066
    Gene description
    small ribosomal subunit protein mL103 (rPPR7)
    Locus tag
    OSNPB_020633200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1643_A10.16
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    Genomic context

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    See LOC4330066 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25879315..25880877)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25392981..25394615)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355058 Neighboring gene wall-associated receptor kinase 5 Neighboring gene uncharacterized LOC4330065 Neighboring gene probable metal-nicotianamine transporter YSL14 Neighboring gene replication protein A 32 kDa subunit B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein mL103 (rPPR7)
    Names
    Os02g0633200
    membrane-associated salt-inducible protein like
    pentatricopeptide repeat-containing protein At4g36680, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25879315..25880877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770035.3 → XP_015625521.1  small ribosomal subunit protein mL103 (rPPR7)

      UniProtKB/TrEMBL
      A0A0P0VME8, A2X7J4, Q0DZB6, Q6H7J7
      Conserved Domains (3) summary
      PLN03218
      Location:166 → 380
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:213 → 240
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:143 → 187
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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