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    LOC4350171 uncharacterized LOC4350171 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350171, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4350171
    Gene description
    uncharacterized LOC4350171
    Locus tag
    OSNPB_110242100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350171 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8028212..8039694)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7595279..7606850)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277040 Neighboring gene protein trichome birefringence-like 16 Neighboring gene probable protein phosphatase 2C 74 Neighboring gene ethylene-responsive transcription factor ERF022

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glucosylceramidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glucosylceramide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350171
    Names
    Os11g0242100
    non-lysosomal glucosylceramidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      8028212..8039694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761849.2 → XP_015617335.1  uncharacterized protein LOC4350171 isoform X2

      UniProtKB/TrEMBL
      Q53Q16
      Conserved Domains (2) summary
      pfam04685
      Location:488 → 850
      DUF608; Protein of unknown function, DUF608
      pfam12215
      Location:68 → 373
      GBA2_N; beta-Glucocerebrosidase 2 N terminal

    2. XM_066305347.1 → XP_066161444.1  uncharacterized protein LOC4350171 isoform X4

      UniProtKB/TrEMBL
      B8BJV0

    3. XM_015761848.3 → XP_015617334.1  uncharacterized protein LOC4350171 isoform X1

      UniProtKB/TrEMBL
      B8BJV0, B9GA45, Q2R859
      Conserved Domains (2) summary
      pfam04685
      Location:530 → 890
      DUF608; Glycosyl-hydrolase family 116, catalytic region
      pfam12215
      Location:110 → 415
      Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

    4. XM_015761850.2 → XP_015617336.1  uncharacterized protein LOC4350171 isoform X3

      UniProtKB/TrEMBL
      B8BJV0
      Conserved Domains (2) summary
      pfam04685
      Location:381 → 743
      DUF608; Protein of unknown function, DUF608
      pfam12215
      Location:19 → 266
      GBA2_N; beta-Glucocerebrosidase 2 N terminal

    5. XM_066305348.1 → XP_066161445.1  uncharacterized protein LOC4350171 isoform X4

      UniProtKB/TrEMBL
      B8BJV0

    6. XM_015761852.2 → XP_015617338.1  uncharacterized protein LOC4350171 isoform X3

      UniProtKB/TrEMBL
      B8BJV0
      Conserved Domains (2) summary
      pfam04685
      Location:381 → 743
      DUF608; Protein of unknown function, DUF608
      pfam12215
      Location:19 → 266
      GBA2_N; beta-Glucocerebrosidase 2 N terminal

    7. XM_015761851.3 → XP_015617337.1  uncharacterized protein LOC4350171 isoform X3

      UniProtKB/TrEMBL
      B8BJV0
      Conserved Domains (2) summary
      pfam04685
      Location:381 → 743
      DUF608; Protein of unknown function, DUF608
      pfam12215
      Location:19 → 266
      GBA2_N; beta-Glucocerebrosidase 2 N terminal
    Nucleotide Protein
    Heading Accession and Version

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