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    LOC4342313 pathogenesis-related protein PRB1-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342313, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342313
    Gene description
    pathogenesis-related protein PRB1-2
    Locus tag
    OSNPB_070127500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1212_C12.40
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    Genomic context

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    See LOC4342313 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1443427..1444149)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1432664..1433417)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357283 Neighboring gene pathogenesis-related protein PRB1-2 Neighboring gene pathogenesis-related protein PRB1-3 Neighboring gene pathogenesis-related protein PRB1-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pathogenesis-related protein PRB1-2
    Names
    B1249D05.19
    Os07g0127500
    putative pathogenesis-related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1443427..1444149
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790662.3 → XP_015646148.1  pathogenesis-related protein PRB1-2

      UniProtKB/TrEMBL
      B8B6W1, Q0D8U8, Q6YSH3
      Conserved Domains (1) summary
      cd05381
      Location:30 → 172
      CAP_PR-1; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of pathogenesis-related protein 1 (PR-1) family proteins
    Nucleotide Protein
    Heading Accession and Version

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