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    LOC4333005 serine/arginine-rich splicing factor SC35 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333005, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333005
    Gene description
    serine/arginine-rich splicing factor SC35
    Locus tag
    OSNPB_030388000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333005 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15827576..15830542, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15475255..15478292, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333003 Neighboring gene protein LNK1 Neighboring gene copper-transporting ATPase PAA1, chloroplastic Neighboring gene uncharacterized LOC107280297

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor SC35
    Names
    Os03g0388000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15827576..15830542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773659.3 → XP_015629145.1  serine/arginine-rich splicing factor SC35 isoform X4

      UniProtKB/TrEMBL
      A0A0P0VY56, B8AQL3, Q0DRG1, Q6AVF4
      Conserved Domains (2) summary
      COG0724
      Location:9 → 203
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:18 → 90
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015773658.3 → XP_015629144.1  serine/arginine-rich splicing factor SC35 isoform X3

      UniProtKB/TrEMBL
      B8AQL3, Q10KD9
      Conserved Domains (2) summary
      COG0724
      Location:9 → 204
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:18 → 90
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_026023720.2 → XP_025879505.1  serine/arginine-rich splicing factor SC35 isoform X2

      UniProtKB/TrEMBL
      B8AQL3
      Conserved Domains (2) summary
      smart00360
      Location:17 → 79
      RRM; RNA recognition motif
      cl25887
      Location:151 → 233
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    4. XM_026023719.2 → XP_025879504.1  serine/arginine-rich splicing factor SC35 isoform X1

      UniProtKB/TrEMBL
      B8AQL3
      Conserved Domains (2) summary
      smart00360
      Location:17 → 79
      RRM; RNA recognition motif
      COG0724
      Location:9 → 241
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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