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    LOC4335529 alpha-copaene synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335529, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335529
    Gene description
    alpha-copaene synthase
    Locus tag
    OSNPB_040345400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ZIS2
    Expression
    Biased expression in leaves before flowering (RPKM 67.9), leaves after flowering (RPKM 45.1) and 3 other tissues See more
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    Genomic context

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    See LOC4335529 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (16766866..16771850)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (16419927..16424941)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene tau-cadinol synthase Neighboring gene tau-cadinol synthase-like Neighboring gene uncharacterized LOC107278525 Neighboring gene uncharacterized LOC112938707

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-copaene synthase
    Names
    Os04g0345400
    alpha-humulene synthase
    putative zingiberene synthase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      16766866..16771850
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778784.3 → XP_015634270.1  alpha-copaene synthase isoform X1

      UniProtKB/TrEMBL
      B8ASG6, B9FEJ3, Q01KN7
      Conserved Domains (1) summary
      cd00684
      Location:54 → 582
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1

    2. XM_015778785.3 → XP_015634271.1  alpha-copaene synthase isoform X2

      UniProtKB/TrEMBL
      B8ASG6, B9FEJ3, Q01KN7
      Conserved Domains (1) summary
      cd00684
      Location:54 → 572
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
    Nucleotide Protein
    Heading Accession and Version

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