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    LOC4326313 NDR1/HIN1-like protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326313, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326313
    Gene description
    NDR1/HIN1-like protein 6
    Locus tag
    OSNPB_010574800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326313 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22669396..22670527, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22098534..22099668, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like Neighboring gene glyoxylate/succinic semialdehyde reductase 2, chloroplastic Neighboring gene probable pyridoxal 5'-phosphate synthase subunit PDX1.1 Neighboring gene protein ROOT HAIR DEFECTIVE 3-like Neighboring gene putative transcription factor bHLH041

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NDR1/HIN1-like protein 6
    Names
    B1151A10.31
    Os01g0574800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      22669396..22670527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771179.3 → XP_015626665.1  NDR1/HIN1-like protein 6

      UniProtKB/TrEMBL
      A0A0N7KD73, A2ZUM2, Q8LQJ5
    Nucleotide Protein
    Heading Accession and Version

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