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    LOC4327348 homeobox-leucine zipper protein HOX29-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327348, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327348
    Gene description
    homeobox-leucine zipper protein HOX29-like
    Locus tag
    OSNPB_010200300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OSHB5; hox29; OsHox29; B1015E06.7
    Expression
    Biased expression in roots before flowering (RPKM 9.0), flowers (RPKM 1.9) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5435872..5440990, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5426521..5431635, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272131 Neighboring gene uncharacterized LOC112936093 Neighboring gene uncharacterized LOC4327349 Neighboring gene nuclear pore complex protein NUP35

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein HOX29
    Names
    HD-ZIP protein HOX29
    Homeodomain transcription factor HOX29
    LOC_Os01g10320
    class III homeodomain-leucine zipper protein
    homeodomain leucine zipper protein 29
    putative homeobox leucine-zipper protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406315.1 → NP_001393244.1  homeobox-leucine zipper protein HOX29

      Status: VALIDATED

      Source sequence(s)
      AB374207, CI232984
      UniProtKB/Swiss-Prot
      A2WLR5, A5JPW5, B2DDE8, Q0JPU9, Q5QMZ9, Q6Q4Z8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5435872..5440990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5QMZ9.2 GenPept UniProtKB/Swiss-Prot:Q5QMZ9

    Gene LinkOut

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