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    LOC4332490 RNA pseudouridine synthase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332490, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4332490
    Gene description
    RNA pseudouridine synthase 5-like
    Locus tag
    OSNPB_030288500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_010020
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    Genomic context

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    See LOC4332490 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10031941..10037377)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9981215..9986772)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332488 Neighboring gene uncharacterized LOC4332489 Neighboring gene beta-taxilin Neighboring gene lipid phosphate phosphatase gamma

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in enzyme-directed rRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA pseudouridine synthase 5
    Names
    LOC_Os03g17920
    RNA pseudouridylate synthase 5
    RNA-uridine isomerase 5
    NP_001404494.1
    XP_025879535.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417565.1 → NP_001404494.1  RNA pseudouridine synthase 5

      Status: VALIDATED

      Source sequence(s)
      AK065443, CF325499, CI098943, CI141080, CI564768, CI628100
      UniProtKB/Swiss-Prot
      Q0DST9, Q10MZ8
      UniProtKB/TrEMBL
      B9F7R0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10031941..10037377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023750.2 → XP_025879535.1  RNA pseudouridine synthase 5 isoform X1

      UniProtKB/TrEMBL
      B9F7R0
      Conserved Domains (1) summary
      cl28494
      Location:51 → 371
      RluA; Pseudouridylate synthase, 23S rRNA- or tRNA-specific [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DST9.2 GenPept UniProtKB/Swiss-Prot:Q0DST9

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials