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    LOC4329938 acetolactate synthase small subunit 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329938, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4329938
    Gene description
    acetolactate synthase small subunit 1, chloroplastic
    Locus tag
    OSNPB_020608550
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0496E03.9
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    Genomic context

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    See LOC4329938 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24368443..24373384)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23885337..23890675)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329936 Neighboring gene integrin-linked protein kinase 1 Neighboring gene uncharacterized LOC112937821 Neighboring gene GDSL esterase/lipase At5g03980 Neighboring gene outer envelope pore protein 37, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetolactate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables acetolactate synthase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-valine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoleucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetolactate synthase small subunit 1, chloroplastic
    Names
    OSJNBa0030C08.36
    Os02g0608550
    Os02g0608600
    acetolactate synthase small subunit 2, chloroplastic
    putative acetolactate synthase small subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24368443..24373384
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772232.3 → XP_015627718.1  acetolactate synthase small subunit 1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9F104
      Conserved Domains (2) summary
      PRK11895
      Location:79 → 231
      ilvH; acetolactate synthase 3 regulatory subunit; Reviewed
      CHL00100
      Location:315 → 481
      ilvH; acetohydroxyacid synthase small subunit

    2. XM_015772233.3 → XP_015627719.1  acetolactate synthase small subunit 1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B9F104
      Conserved Domains (4) summary
      cd04878
      Location:312 → 383
      ACT_AHAS; N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)
      PRK11895
      Location:76 → 228
      ilvH; acetolactate synthase 3 regulatory subunit; Reviewed
      CHL00100
      Location:312 → 478
      ilvH; acetohydroxyacid synthase small subunit
      pfam10369
      Location:156 → 228
      ALS_ss_C; Small subunit of acetolactate synthase
    Nucleotide Protein
    Heading Accession and Version

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