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    LOC4324462 PH, RCC1 and FYVE domains-containing protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324462, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324462
    Gene description
    PH, RCC1 and FYVE domains-containing protein 1
    Locus tag
    OSNPB_010964800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324462 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43193776..43199451)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42541326..42547124)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene actin-97 Neighboring gene uncharacterized LOC107277817 Neighboring gene protein MITOFERRINLIKE 1, chloroplastic Neighboring gene DNA-directed RNA polymerase V subunit 1 Neighboring gene DNA-directed RNA polymerase V subunit 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PH, RCC1 and FYVE domains-containing protein 1
    Names
    E3 ubiquitin-protein ligase HERC2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43193776..43199451
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758919.3 → XP_015614405.1  PH, RCC1 and FYVE domains-containing protein 1

      UniProtKB/TrEMBL
      B8A9M0, B9EWL9
      Conserved Domains (4) summary
      smart00064
      Location:420 → 488
      FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
      COG5184
      Location:35 → 413
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      pfam08381
      Location:838 → 892
      BRX; Transcription factor regulating root and shoot growth via Pin3
      pfam13713
      Location:668 → 697
      BRX_N; Transcription factor BRX N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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