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    LOC4325865 pentatricopeptide repeat-containing protein At1g69290 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325865, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325865
    Gene description
    pentatricopeptide repeat-containing protein At1g69290
    Locus tag
    OSNPB_010788900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0557A01.5
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    Genomic context

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    See LOC4325865 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34085219..34087777, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33478984..33481430, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene early nodulin-like protein 9 Neighboring gene homeobox-leucine zipper protein TF1-like Neighboring gene uncharacterized LOC107276702 Neighboring gene F-box protein At4g22280

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g69290
    Names
    Os01g0788900
    P0415A04.47
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      34085219..34087777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774172.3 → XP_015629658.1  pentatricopeptide repeat-containing protein At1g69290

      UniProtKB/TrEMBL
      A0A0P0V940, A2ZYK4, Q0JIN0, Q8RVE5
      Conserved Domains (4) summary
      PLN03081
      Location:389 → 661
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      PLN03218
      Location:397 → 484
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:527 → 553
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:527 → 569
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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