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    LOC4342966 transcription initiation factor TFIID subunit 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342966, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342966
    Gene description
    transcription initiation factor TFIID subunit 15
    Locus tag
    OSNPB_070296200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342966 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11683481..11688012, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11592327..11596911, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357328 Neighboring gene uncharacterized LOC4342965 Neighboring gene uncharacterized LOC136357481 Neighboring gene uncharacterized LOC4342967

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 15
    Names
    B1272H04.13-1
    B1272H04.13-2
    Os07g0296200
    RRM-containing RNA-binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      11683481..11688012 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791266.3 → XP_015646752.1  transcription initiation factor TFIID subunit 15 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KNA3, B9FWQ9, Q6YS82
      Conserved Domains (3) summary
      smart00547
      Location:218 → 241
      ZnF_RBZ; Zinc finger domain
      cd12534
      Location:14 → 96
      RRM_SARFH; RNA recognition motif (RRM) found in Drosophila melanogaster RNA-binding protein cabeza and similar proteins
      sd00029
      Location:148 → 169
      zf-RanBP2; RanBP2-type Zn finger [structural motif]

    2. XM_015791267.3 → XP_015646753.1  transcription initiation factor TFIID subunit 15 isoform X2

      UniProtKB/TrEMBL
      B7EU76, Q69IY8
      Conserved Domains (3) summary
      smart00547
      Location:184 → 207
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 135
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cl17169
      Location:1 → 62
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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