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    LOC4342730 17kDa alpha-amylase/trypsin inhibitor 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342730, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342730
    Gene description
    17kDa alpha-amylase/trypsin inhibitor 2-like
    Locus tag
    OSNPB_070216700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_23556; OJ1080_F08.106; OJ1779_B07.133
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    Genomic context

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    See LOC4342730 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (6511143..6511937, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (6432376..6433165, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene 17kDa alpha-amylase/trypsin inhibitor 1-like Neighboring gene uncharacterized LOC136357389 Neighboring gene small nucleolar RNA R71 Neighboring gene ent-cassadiene hydroxylase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    17kDa alpha-amylase/trypsin inhibitor 2
    Names
    LOC_Os07g11650
    Os07g0216700
    trypsin/amylase inhibitor pUP13-like protein
    trypsin/amylase inhibitor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422064.1 → NP_001408993.1  17kDa alpha-amylase/trypsin inhibitor 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AU165801, CI675291, CI682056
      UniProtKB/Swiss-Prot
      Q7X8H9
      UniProtKB/TrEMBL
      A2YJG7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      6511143..6511937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X8H9.1 GenPept UniProtKB/Swiss-Prot:Q7X8H9

    Gene LinkOut

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