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    LOC4345696 uncharacterized LOC4345696 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345696, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345696
    Gene description
    uncharacterized LOC4345696
    Locus tag
    OSNPB_080442300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0708B04.4
    Expression
    Ubiquitous expression in flower buds (RPKM 13.5), flowers (RPKM 11.5) and 6 other tissues See more
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    Genomic context

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    See LOC4345696 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21690282..21692660)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21551899..21558628)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene AUGMIN subunit 8 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene uncharacterized LOC136351117 Neighboring gene AP2-like ethylene-responsive transcription factor At1g79700

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345696
    Names
    Os08g0442300
    Os08g0442350
    P0528B09.47-1
    P0528B09.48
    P0708B04.3-1
    calcineurin subunit B
    putative Calcineurin B subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21690282..21692660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792579.3 → XP_015648065.1  uncharacterized protein LOC4345696

      UniProtKB/TrEMBL
      A0A5S6RBL3, Q0J5D5, Q6Z8S1, Q6Z9E3
      Conserved Domains (1) summary
      COG5126
      Location:21 → 160
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    2. XM_015792578.3 → XP_015648064.1  uncharacterized protein LOC4345696

      UniProtKB/TrEMBL
      A0A5S6RBL3, Q0J5D5, Q6Z8S1, Q6Z9E3
      Conserved Domains (1) summary
      COG5126
      Location:21 → 160
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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