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    LOC4328932 large ribosomal subunit protein bL21c [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328932, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328932
    Gene description
    large ribosomal subunit protein bL21c
    Locus tag
    OSNPB_020259600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ASL2
    Expression
    Broad expression in leaves before flowering (RPKM 135.1), flowers (RPKM 59.6) and 4 other tissues See more
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    Genomic context

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    See LOC4328932 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9031357..9033514, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9005321..9007498, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene GTP 3',8-cyclase, mitochondrial Neighboring gene uncharacterized LOC4328931 Neighboring gene BAG family molecular chaperone regulator 6 Neighboring gene F-box/kelch-repeat protein At3g61590

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death. Lin D, et al. Plant Biol (Stuttg), 2015 May. PMID 25280352
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein bL21c
    Names
    50S ribosomal protein L21, chloroplastic
    Albino Seedling Lethal2
    B1178F07.15
    OSJNBa0060K08.25
    Os02g0259600
    putative 50S ribosomal protein L21, chloroplast

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9031357..9033514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768127.2 → XP_015623613.1  large ribosomal subunit protein bL21c

      UniProtKB/TrEMBL
      A2X358, A3A587, Q6K241
      Conserved Domains (1) summary
      pfam00829
      Location:97 → 197
      Ribosomal_L21p; Ribosomal prokaryotic L21 protein
    Nucleotide Protein
    Heading Accession and Version

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