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    LOC4332718 guanine nucleotide exchange factor SPIKE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332718, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4332718
    Gene description
    guanine nucleotide exchange factor SPIKE 1
    Locus tag
    OSNPB_030327900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332718 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12049091..12062892)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11993790..12007838)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355757 Neighboring gene NAC domain-containing protein 58-like Neighboring gene rhamnogalacturonan I rhamnosyltransferase 4 Neighboring gene uncharacterized LOC136355837

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in small GTPase-mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    guanine nucleotide exchange factor SPIKE 1
    Names
    Os03g0327900
    Os03g0328000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      12049091..12062892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775852.3 → XP_015631338.1  guanine nucleotide exchange factor SPIKE 1

      UniProtKB/TrEMBL
      B9F8Y9
      Conserved Domains (2) summary
      cd08679
      Location:467 → 637
      C2_DOCK180_related; C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins
      pfam06920
      Location:1343 → 1826
      DHR-2; Dock homology region 2

    2. XM_066308546.1 → XP_066164643.1  guanine nucleotide exchange factor SPIKE 1

      UniProtKB/TrEMBL
      B9F8Y9
    Nucleotide Protein
    Heading Accession and Version

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