U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4345621 THO complex subunit 4D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345621, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4345621
    Gene description
    THO complex subunit 4D
    Locus tag
    OSNPB_080427900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1663_D06.13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4345621 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20716142..20720639, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20578930..20583507, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable inactive receptor kinase RLK902 Neighboring gene probable histone H2A.3 Neighboring gene agamous-like MADS-box protein AGL80 Neighboring gene F-box protein SKIP28

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    THO complex subunit 4D
    Names
    OSJNBb0032E15.120
    Os08g0427900
    putative transcriptional coactivator(DIP2)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      20716142..20720639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794415.3 → XP_015649901.1  THO complex subunit 4D isoform X2

      UniProtKB/TrEMBL
      B8BAZ9, B9G106
      Conserved Domains (2) summary
      COG0724
      Location:90 → 168
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12680
      Location:90 → 163
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins

    2. XM_015794414.3 → XP_015649900.1  THO complex subunit 4D isoform X1

      UniProtKB/TrEMBL
      B8BAZ9, B9G106, Q0J5K6, Q7EY69
      Conserved Domains (2) summary
      TIGR01628
      Location:89 → 271
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12680
      Location:90 → 163
      RRM_THOC4; RNA recognition motif (RRM) found in THO complex subunit 4 (THOC4) and similar proteins

    3. XM_066303271.1 → XP_066159368.1  THO complex subunit 4D isoform X1

      UniProtKB/TrEMBL
      B8BAZ9, B9G106, Q0J5K6, Q7EY69
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials