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    LOC9266130 extensin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266130, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9266130
    Gene description
    extensin
    Locus tag
    OSNPB_060638900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0458E02.1
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    Genomic context

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    See LOC9266130 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26827584..26831125, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25963876..25967702, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At4g37250 Neighboring gene cyclase-like protein 2 Neighboring gene probable E3 ubiquitin ligase SUD1 Neighboring gene ethylene-responsive transcription factor RAP2-7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    extensin
    Names
    Calcium-binding protein-like
    Os06g0638900
    P0523F01.30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      26827584..26831125 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787533.3 → XP_015643019.1  extensin

      Conserved Domains (2) summary
      cd00030
      Location:8 → 105
      C2; C2 domain
      PRK10263
      Location:160 → 248
      PRK10263; DNA translocase FtsK; Provisional
    Nucleotide Protein
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