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    LOC4339164 F-box protein At4g18380 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339164, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4339164
    Gene description
    F-box protein At4g18380
    Locus tag
    OSNPB_050490300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 25.7), flowers (RPKM 21.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24204522..24206399, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24089815..24091750, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL30 Neighboring gene uncharacterized LOC4339163 Neighboring gene uncharacterized LOC4339165 Neighboring gene vacuolar protein sorting 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein At4g18380
    Names
    F-box domain-containing protein
    Os05g0490300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      24204522..24206399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783256.3 → XP_015638742.1  F-box protein At4g18380

      UniProtKB/TrEMBL
      A0A979HJI6, A2Y602, B7EK14, B9FJZ7, Q6F324
      Conserved Domains (1) summary
      pfam12937
      Location:15 → 50
      F-box-like
    Nucleotide Protein
    Heading Accession and Version

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