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    LOC4335948 calmodulin-binding protein 60 D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335948, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4335948
    Gene description
    calmodulin-binding protein 60 D
    Locus tag
    OSNPB_040444200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335948 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22638849..22644424)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22149720..22155382)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase EL5-like Neighboring gene uncharacterized LOC9268617 Neighboring gene protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE-like Neighboring gene MLO-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of salicylic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding protein 60 D
    Names
    Os04g0444200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419356.1 → NP_001406285.1  calmodulin-binding protein 60 D

      Status: VALIDATED

      Source sequence(s)
      AK072545, AP014960, CB657806
      UniProtKB/TrEMBL
      A0A0P0WAT8, A2XTW1, Q7XRM0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22638849..22644424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780836.3 → XP_015636322.1  calmodulin-binding protein 60 D isoform X1

      UniProtKB/TrEMBL
      A0A0P0WAT8, A2XTW1, Q7XRM0
      Conserved Domains (1) summary
      pfam07887
      Location:104 → 396
      Calmodulin_bind; Calmodulin binding protein-like
    Nucleotide Protein
    Heading Accession and Version

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