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    LOC4328473 putative clathrin assembly protein At5g57200 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328473, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4328473
    Gene description
    putative clathrin assembly protein At5g57200
    Locus tag
    OSNPB_020175700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1077_E05.14
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    Genomic context

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    See LOC4328473 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4145216..4149716, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4135951..4140410, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glycosyltransferase BC10-like Neighboring gene large ribosomal subunit protein uL15x Neighboring gene uncharacterized LOC9268832 Neighboring gene uncharacterized LOC4328475

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables clathrin heavy chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle budding from membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in clathrin-coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in clathrin-coated vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative clathrin assembly protein At5g57200
    Names
    Os02g0175700
    synaptosomal-associated protein 91-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4145216..4149716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771709.3 → XP_015627195.1  putative clathrin assembly protein At5g57200 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KES7, B8AIK8, B9F3C3, Q6EUQ6
      Conserved Domains (1) summary
      pfam07651
      Location:29 → 305
      ANTH; ANTH domain

    2. XM_026023319.2 → XP_025879104.1  putative clathrin assembly protein At5g57200 isoform X2

      UniProtKB/TrEMBL
      B8AIK8
      Conserved Domains (1) summary
      pfam07651
      Location:29 → 307
      ANTH; ANTH domain
    Nucleotide Protein
    Heading Accession and Version

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