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    LOC4335621 uncharacterized LOC4335621 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335621, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335621
    Gene description
    uncharacterized LOC4335621
    Locus tag
    OSNPB_040379300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 13.8), flowers (RPKM 11.3) and 6 other tissues See more
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    Genomic context

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    See LOC4335621 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (18874260..18884546)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (18520402..18530699)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277283 Neighboring gene uncharacterized LOC136356297 Neighboring gene uncharacterized LOC136351243 Neighboring gene uncharacterized LOC136356123 Neighboring gene uncharacterized LOC4335622 Neighboring gene uncharacterized LOC9268951 Neighboring gene RPM1-interacting protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4335621
    Names
    Os04g0379300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      18874260..18884546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780157.3 → XP_015635643.1  uncharacterized protein LOC4335621 isoform X1

      UniProtKB/TrEMBL
      A0A0P0W9H0, B8AT13, Q7XVE1
      Conserved Domains (2) summary
      pfam13649
      Location:81 → 177
      Methyltransf_25; Methyltransferase domain
      cl17173
      Location:544 → 693
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. XM_026025129.2 → XP_025880914.1  uncharacterized protein LOC4335621 isoform X2

      UniProtKB/TrEMBL
      B9FET0
      Conserved Domains (1) summary
      cl17173
      Location:392 → 541
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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