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    LOC4350511 O-fucosyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350511, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350511
    Gene description
    O-fucosyltransferase 1
    Locus tag
    OSNPB_110481200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 27.6), flower buds (RPKM 24.5) and 6 other tissues See more
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    Genomic context

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    See LOC4350511 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (18783380..18789102, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (16866309..16872048, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable disease resistance protein At1g61300 Neighboring gene putative disease resistance protein At3g14460 Neighboring gene putative disease resistance protein At4g19050 Neighboring gene small ribosomal subunit protein uS7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-fucosyltransferase 1
    Names
    Os11g0481200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      18783380..18789102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762318.3 → XP_015617804.1  O-fucosyltransferase 1

      UniProtKB/TrEMBL
      A0A8J8YDC9, B8BKH6, B9GAP0, Q2R4A9
      Conserved Domains (2) summary
      cd11299
      Location:94 → 418
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
      pfam10250
      Location:97 → 419
      O-FucT; GDP-fucose protein O-fucosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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