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    LOC4333833 phosphatidylinositol 4-phosphate 5-kinase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333833, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4333833
    Gene description
    phosphatidylinositol 4-phosphate 5-kinase 1-like
    Locus tag
    OSNPB_030701800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIP5K; PIPK1
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    Genomic context

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    See LOC4333833 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29053659..29059922)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28179878..28185949)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333831 Neighboring gene probable ethylene response sensor 1 Neighboring gene uncharacterized LOC107280443 Neighboring gene uncharacterized LOC4333834 Neighboring gene uncharacterized LOC136355581

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OsPIPK 1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes. Ma H, et al. Plant Mol Biol, 2004 Jan. PMID 15159629
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol-4-phosphate 5-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol 4-phosphate 5-kinase 1
    Names
    1-phosphatidylinositol 4-phosphate kinase
    Diphosphoinositide kinase
    LOC_Os03g49510
    PtdIns(4)P-5-kinase
    phosphatidylinositol-4-phosphate 5-kinase
    NP_001389159.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402230.1 → NP_001389159.1  phosphatidylinositol 4-phosphate 5-kinase 1

      Status: VALIDATED

      Source sequence(s)
      AJ544688, AP014959, AU182674, C99721, CB664538, CI398470
      UniProtKB/TrEMBL
      B9FAS8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29053659..29059922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001402227.1: Suppressed sequence

      Description
      NM_001402227.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.

    2. NR_175008.1: Suppressed sequence

      Description
      NR_175008.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6EX42.2 GenPept UniProtKB/Swiss-Prot:Q6EX42

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials