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    LOC4328446 glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328446, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328446
    Gene description
    glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic
    Locus tag
    OSNPB_020171100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1116_A06.36
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    Genomic context

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    See LOC4328446 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3877207..3881945)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3868104..3872941)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267856 Neighboring gene uncharacterized LOC4328445 Neighboring gene uncharacterized LOC112937803 Neighboring gene uncharacterized LOC4328447

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic
    Names
    Os02g0171100
    P0030G02.26
    putative glyceraldehyde-3-phosphate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3877207..3881945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772221.3 → XP_015627707.1  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VF84, B8AII9, Q0E3J3, Q6H703
      Conserved Domains (1) summary
      PLN02272
      Location:25 → 411
      PLN02272; glyceraldehyde-3-phosphate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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